Sinorhizobium fredii HH103: SFHH103_01302
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Entry
SFHH103_01302 CDS
T01731
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03410
Base excision repair
sfh03430
Mismatch repair
sfh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SFHH103_01302 (recJ)
03430 Mismatch repair
SFHH103_01302 (recJ)
03440 Homologous recombination
SFHH103_01302 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_01302 (recJ)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SFHH103_01302 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SFHH103_01302 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFHH103_01302 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
CCE95800
UniProt:
G9A5X2
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All DBs
Position
1399817..1401619
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AA seq
600 aa
AA seq
DB search
MDVLADPIERAFLGVERSISGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGL
DDAAQFLDPTLRALMPDPDVLTDCRKAAERLAHAIRRGEKVAIFGDYDVDGAASSALMLR
FLRHFDLRAEIYIPDRIFEGYGPNPQAIEQLIDNGAGLIVAVDCGSTSHESLAVAAERKV
DVVVIDHHQVGATLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLAGEPRA
ASFDLLALLDLVALATVCDVVPLKGLNRAYVVKGLVAARHMGNDGLAALLRKAAIGGPVT
PYHLGFLIGPRINAGGRIGDAALGSRLLTLDDATAAEVIASQLDELNRERQAMEAAMLAE
AEAEVLAEYGTGEGASVIVTARENWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSG
RSIAGFDMGRLVRAAVDDGLLVKGGGHAMAAGLTVERAKLGRLRQFFEERAESSVRDLVA
VEALKLDGALAAAGATLDLVDLLDQAGPYGSAHPQPVFAFPQHRLRDSRQVGANHVKVTL
EGHDGSRVDGIAFRATETPLGDFLLGNRGATVHVAGSVSADLWQGTRRVQLRVTDAAKAN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgtattggcggatccgatagagagggcatttctcggcgtcgaacgctcgatcagc
ggtcagcgctgggtgtcacgcctcgatcaggcggggcagaatcgcgctttggcgatcagc
caggtgcacggctattcggagctcatcgcacgggtactggcaggccgcggcgtcggcctg
gacgacgcggctcagtttctcgatccgacgctgcgcgcgctgatgcccgatccggacgtc
ctgaccgattgccgcaaggcggcggagcggctcgcccacgccattcggcgcggcgagaaa
gtagcgatcttcggcgactacgacgtcgacggcgcagcatcctctgcactgatgctgcgc
ttcctccgccatttcgacctccgggccgagatctatattccggatcgtatcttcgagggc
tacgggccgaatccgcaggcgatcgaacaactgatcgacaacggcgccggtctgatcgtc
gccgtcgactgcggttcgacgagccatgagtcgctcgccgtcgccgccgagcgcaaggtc
gacgtcgtcgtcatcgatcaccatcaggtcggcgcaacgcttccgccctgccatgctctc
gtcaatccgaaccgcgaggacgatttgtccgggcaggggcatctctgcgccgccggcgtc
gtctatctggtgctcgtcaatacattgcgggtgctgcgtcttgcgggcgagccgcgcgcc
gcctcattcgaccttctggccctgctcgacctcgtcgcgctcgcaacggtctgcgacgta
gttccgctgaaggggctgaaccgagcctatgtggtcaagggactggtcgcggcgcggcac
atgggcaatgacggcctggcagcccttttgcgcaaggccgcgatcggcggtccggtgacg
ccctatcacctcggctttctgattggtccacgcatcaatgcgggtggccgtatcggcgat
gccgcgctcggcagccggctattgacccttgacgacgccacggcagccgaggtgatcgcc
agccaactcgacgagctcaatcgcgagcggcaggcgatggaggcggcgatgcttgccgag
gcggaggcggaagtgctggcggaatacggcacgggcgagggggcgtccgtgatcgtcacc
gccagggaaaactggcacccgggcatcgttggcctcatcgcggcgcgcatcaaggagaaa
tttcgccggccggcctttgccatcgccttcgatccgaacggccggggcacgggctccggc
cgatcgattgcgggcttcgatatgggcaggctcgttcgcgccgccgtcgacgatggcctt
ctcgtcaaagggggcggacatgccatggccgccggcctaacggtcgagcgggcaaaactc
gggcgattgcgccaattcttcgaggagcgcgccgagagctcagtacgcgacctggttgcc
gttgaggcgctcaagctcgacggcgcgttggcagcggccggggcaacgctcgacctcgtc
gaccttctcgaccaggccggcccctatggctcggcccatccgcaaccggtattcgccttt
ccccagcatcggctgcgcgacagccggcaggtcggcgccaatcatgtcaaggtgacgctc
gagggtcacgacggcagccgggttgacggcatcgccttccgggcgacggaaacgccgctc
ggcgatttcctgcttggcaaccgcggcgcgacggttcatgtcgccggttcggtttcggcg
gatctatggcagggaacgcgccgcgtgcaactgcgtgtgacggacgctgcgaaagccaat
tga
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