Sinorhizobium fredii HH103: SFHH103_01585
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Entry
SFHH103_01585 CDS
T01731
Symbol
ycbB
Name
(GenBank) Uncharacterized protein ycbB
KO
K21470
L,D-transpeptidase YcbB
Organism
sfh
Sinorhizobium fredii HH103
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sfh01002
]
SFHH103_01585 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sfh01011
]
SFHH103_01585 (ycbB)
Peptidases and inhibitors [BR:
sfh01002
]
Cysteine peptidases
Family C82
SFHH103_01585 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
sfh01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
SFHH103_01585 (ycbB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
CCE96082
UniProt:
G9A752
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All DBs
Position
complement(1716835..1718733)
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AA seq
632 aa
AA seq
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MKMIRSVAIVALMTGCAIATMDVRPASAITLMDFIRGGRERTRERAYPAQPMPGYGMMAP
HRLEDRAVTKPPRVSSPRYYTYKPEQMRRIATDRLVDPVVTGSVQSYGFPPMLRIPLADA
RQFLPQVEVRAPADVAKAVEAFYGGRTDFVWIDGNGANARARSALAVLADAAKTGLDPAD
YAVAVPADDFDRADMVAREKDLVRFEIAMSAAVLTYVQDTVRGRVDPNKISGYHDFKRKS
VDLVAFLDKAATSGDVAALMEERSPKSPQFLALKQELERLRADTDAAPRIEIAPGTLLKP
GDNNPELANIVAGIKLKASEALKTEHAVVLAGYQGTPEYTPELVSLVEAFQKEQGLKADG
VVGQASIRVLTGGDTTASKINKIEIAMEQARWLPDGLGNRYVFINQPAFMAYYTDQGAEQ
FSMRVVVGTKANQTYFFHDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPSYLDRMGYQVE
VGGRVVPSYAVDWYGSTNSIAVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDQ
RALSHGCVRLAEPRRMAAAVLGVSMDDVGKEIAQGHNRALPVPQKVPVYVSYFTAWPNKD
GKVEYFNDVYERDMYMDRAFEATRKARQQAEG
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgatcagatcggtagcgattgtcgcgctcatgaccggctgtgcgattgcaacc
atggatgtgcggccggcctcagcgataacgctgatggatttcatccgcggcggcagggaa
cgcacgcgggagcgggcctatccggcccagccgatgccgggatacggcatgatggcgccg
catcgccttgaagacagggcggtgacaaagccgccgcgggtttccagcccgcgttactat
acctacaagcccgagcagatgcgcaggattgcgaccgatcggctggtcgatcctgtcgtg
acgggttccgtgcagagctacggctttccgcccatgctgcggattccgctggcggatgcg
cgccagttcttgccgcaagtcgaggttcgcgctccggccgatgtcgcaaaggccgtcgag
gccttttatggcggacgaaccgacttcgtctggatcgatggcaatggcgccaatgcaagg
gcccgatcggctctcgcggttcttgccgatgccgcaaagaccgggctcgatccggcggac
tatgccgtcgctgttccggccgacgacttcgatcgcgccgacatggtggcgcgggaaaag
gacctggtacgtttcgagatcgccatgtccgctgcagtcctcacttatgtgcaggacacg
gtgcggggccgcgtcgacccgaacaagatatccggctatcacgacttcaagcgcaagagc
gtcgatctcgtcgcatttctcgacaaggccgcgacaagtggcgatgttgcagccctgatg
gaagagcgaagcccgaagagcccgcaattcctcgcattgaagcaggagctcgaaaggctg
cgagccgatacggacgccgccccgcgcatcgagatcgctcccgggacgctgctgaagcca
ggcgacaacaatccggagcttgccaatatcgtcgccggcataaagctgaaggcttccgag
gcgctgaagaccgagcatgccgtcgtgctggccggttaccagggtacgcccgagtacacg
ccggaactggtttcactcgtcgaagcctttcagaaggagcaggggctgaaggcggacggt
gtcgtcggccaggcctcgatccgcgtcctgaccggcggcgatacgacggccagcaagatc
aacaagatcgagatcgcgatggagcaggcccgctggctgccggacggtctcggcaatcgc
tacgtcttcatcaaccagcccgccttcatggcctactataccgaccagggcgcggagcag
ttctccatgcgggtcgtggtcgggacgaaggcgaaccagacctatttcttccacgacgag
atccagaccgtcgaggtcaatccctattggggcgtgccccagtcgatcatcgtcaacgag
atgctgccgaagctgcgcagcgatccgagctatctcgaccgcatggggtatcaggtcgag
gtcggcggtcgggtcgtcccgtcttacgcggtggattggtacggatcgacgaactcgatc
gccgtgcgccagccgccgagcagcgacaacgcgctgggagagttgaagatactgttcccg
aactcgcatgcgatctacatgcacgacacgccgtcgaagagtttcttcaagcgtgaccag
cgggcgctcagtcatggatgcgtccgcctcgccgagccgcgccgcatggcggccgccgtc
cttggcgtcagcatggacgatgtcggcaaggagatcgcccaggggcacaacagagccttg
ccggtgcctcagaaggtgccggtctatgtttcctacttcacggcatggccgaacaaggac
ggcaaggtcgaatatttcaacgacgtctatgagcgggacatgtacatggatcgggcgttc
gaagcgacacgcaaggcccggcagcaggccgaaggctga
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