Sinorhizobium fredii HH103: SFHH103_01977
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Entry
SFHH103_01977 CDS
T01731
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03420
Nucleotide excision repair
sfh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFHH103_01977 (uvrD)
03430 Mismatch repair
SFHH103_01977 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_01977 (uvrD)
Enzymes [BR:
sfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFHH103_01977 (uvrD)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFHH103_01977 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SFHH103_01977 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
CCE96472
UniProt:
G9A892
LinkDB
All DBs
Position
2113392..2115965
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AA seq
857 aa
AA seq
DB search
MSKGFDDIPFFDEEPAPRKPAPAAGGIAARAMAARDKAQRPDYLSGLNPEQREAVETLEG
PVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVGHAVE
GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF
AGMIDTWKNKGLDPAHIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMF
RANPDVLRDYHDKFRYILVDEYQDTNTAQYMWLRLLAQRPQGKAGVARATPAGEARASQG
WPDDVSSAPAERSRASGDSVSANKQQQINICCVGDDDQSIYGWRGAEVDNILRFEKDFPG
AKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERSHPDDEKVHVHAAWDSEEEAR
AIGEEIEQLQRQKHKLNDIAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDA
MAYFRLVCQPADDLAFERIVNTPKRGLGDTTVRNLHDYARARDVPMLAAATEIIETDELK
PKARKALFDVVTDFRRWQTLLETTPHTELAEQILDESGYTAMWQADKSAEAPGRLENLKE
LIRSMEAFESMRGFLEHVALVMDAEQNENMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFP
HQRALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQTTMPSRFLDELPID
HVEVAEQDVSYGGYNRGGYGQSRFDKADPFENTYQTPGWKRAQQHRSDATRDNWGSRSGH
AVERIGYGESGPRTRTIEGELVAKSTTAEPSRFNVGDRVFHLKFGNGNIAAIEGNKLTID
FDRAGQKRVLDGFVERV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggtttcgacgacattcccttcttcgacgaggagccggcgccgcgcaaaccc
gcgcctgccgccggcggcatcgccgcgcgcgccatggcggcccgcgacaaggcccagcgg
cccgactatctctctggcctcaaccccgaacagcgcgaagccgtcgaaacgcttgagggt
ccggtcctggtgctcgccggcgccggcaccggcaagacgcgcgtgctcaccacccgcatc
gcgcatatcctttcgaccggccgcgcctatccatcgcaaatcctcgcagtgaccttcacc
aacaaggcggcccgcgagatgaaggagcgcatcggcgtgctcgtcggccatgcggtcgaa
ggcatgccctggctcggcaccttccactcgatcggcgtcaagctcttgcgtcgccacgcc
gagctcgtgggcctgagatccgacttcaccatcctcgataccgacgacgtggtccgtctg
atcaagcagctgatccaggccgaaggcctcgacgacaaacgctggccggccaagcaattc
gccggcatgatcgacacctggaagaacaaggggctcgatccggcgcatatcccggagggc
gacgcccgcgctttcgccaacggcaagggccgcgagctctatgccgcctatcagaaccgg
ctgctgacgctcaacgcctgcgatttcggcgacctgctgctgcacccgatccgcatgttc
cgcgccaatccggacgtgctcagggactaccacgacaagttccgctacatcctggtcgac
gagtaccaggataccaacacggcgcagtatatgtggctgcggctcctggcgcagcggccg
cagggcaaggccggcgtcgcgagggccacgcctgcgggcgaagcccgagccagccaaggc
tggccggacgacgtttcgtccgcccccgcggagcgcagccgcgccagcggcgacagcgtg
agcgcaaataaacagcagcagataaatatctgctgcgtcggtgacgacgaccagtcgatc
tatggttggcgcggcgccgaggtcgacaacatcctccggttcgagaaggattttcccggc
gccaaggtcatcaagctcgagcgcaattaccgctcgaccgagcacatcctcggcgccgcc
gcgcatctgatcgcccacaacgagggccggctcggcaagacgctcttcaccgagcgcagc
cacccggacgacgagaaggtgcacgtccatgcggcctgggactccgaagaggaagcccgc
gccatcggcgaggagatcgagcagctccagcgtcagaagcataagctgaacgacatcgcc
atcctggtgcgcgcctccttccagatgcgcgaattcgaagaccgcttcgtcaccctaggc
ctcaattatcgcgtcatcggcggaccgcgcttctacgagcggctcgagatccgcgatgcc
atggcctatttccgcctcgtctgccagccggccgacgaccttgccttcgagcgcatcgtc
aacacgccgaagcgcggacttggcgacaccaccgttcgcaaccttcacgactatgcccgc
gcccgcgacgttccgatgctcgccgcggcaaccgagatcatcgaaaccgacgagctgaag
ccgaaggcgcgcaaggcgctcttcgacgtcgtcaccgatttccgccgttggcagaccttg
ctcgaaacgacgcctcatacggaactcgccgagcagatcctcgacgagagcggctatacg
gcaatgtggcaggccgacaagtccgccgaagcgccgggacgactcgaaaacctcaaggaa
ctgatccgctcgatggaggccttcgagtcgatgcgcggcttcctggagcatgtcgcgctg
gtcatggatgccgagcagaacgagaacatggatgccgtgtcgatcatgacgctgcattcg
gccaagggcctggaattcgacaccgtcttcctgccgggctgggaggaaggcctctttccg
catcagcgcgccctcgacgagggcggccgcgccggtctcgaggaggagcgccgcctcgcc
tatgtcggcatcacccgcgccaagcgccgctgccatatctggttcgtctcgaaccgccgc
atccatggtctctggcagacgaccatgccctcacgcttcctcgacgaactgccgatcgac
catgtcgaggtcgccgagcaggacgtctcctatggcggctacaatcgcggcggttacggc
cagtcgcgcttcgacaaggccgaccccttcgaaaacacctaccagacgcccggctggaag
cgcgcccagcagcaccgctcggacgccacccgcgacaattggggcagccgctccggccac
gccgtcgagcgcatcggctacggcgaatccggcccccgcacccgcaccatcgagggcgaa
ctcgtcgccaaatcgaccaccgcggaaccctcgcgcttcaacgtcggggatcgcgtcttc
cacctaaaattcggcaacggcaacattgccgcgatcgaaggcaacaagctgacgatcgat
ttcgatcgtgccggtcagaagcgcgtgctggacgggtttgtggaacgggtgtga
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