Sinorhizobium fredii HH103: SFHH103_02130
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Entry
SFHH103_02130 CDS
T01731
Symbol
recQ
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFHH103_02130 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfh03019
]
SFHH103_02130 (recQ)
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_02130 (recQ)
Enzymes [BR:
sfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFHH103_02130 (recQ)
Messenger RNA biogenesis [BR:
sfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SFHH103_02130 (recQ)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SFHH103_02130 (recQ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
Motif
Other DBs
NCBI-ProteinID:
CCE96625
UniProt:
G9A8P5
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All DBs
Position
complement(2287022..2288884)
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AA seq
620 aa
AA seq
DB search
MPETPHTTARLFETQGIANPLDVLKRVYGFSAFRGQQQGVVEHVVAGGDAVVLFPTGAGK
SLCFQIPALCRKGVGIVISPLIALMRDQVEALKQLDIRAAALNSSLTRDEAIAVRRALSA
DELDLLYVTPERAVTDGFAEMIGDMDIALFAIDEAHCVSQWGHDFRPEYRGLNCLASRFP
GVPRVALTATADHHTRDDIIERLALQGARVFTTSFDRPNIAYEIVERDQPRQQLLRFLSR
FKDSSGIVYCLSRAKVEDTAEWLTGQGIRALPYHAGMDRALRDRHQDAFLKEENLCLVAT
VAFGMGIDKPDVRYVAHLDMPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRRRMID
EGGAPDEIKRIERSKLNSLLAICETVGCRRQAILAHFGEAHPGRCSHCDTCLKPVETWDG
TEAAIKALAAVYRTGERFGTGHVIDVLMGTVNDKTERFGHADMPVFGAGKDLPARTWQSV
FRQLLAAGLITVDHAAFGAMKLEPEARAVFKRERQVLFRKDRPSSGKARGQKSTSARERS
DLAGSDLELFEKLRAERFSIAKELNVPPYVVFPDTTLIALAKQRPRDFDDLLDIPGIGES
KRERYGEAFLAVIDAFEEGG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaccccccataccaccgcgcgcctgttcgagacgcaaggcatcgccaatccc
cttgatgtgctcaagcgcgtctatggcttttccgctttccgcggacagcaacagggcgtc
gtcgaacacgtcgtggcaggcggtgatgccgtcgtacttttcccgaccggggccggcaag
tcgctctgcttccagataccggcgctgtgtcggaaaggcgtcggcattgtcatctcgccg
ctgatcgccctgatgcgcgatcaggtggaggcgctgaagcagctcgatattcgtgcggcc
gcgctcaattcctcgctcacccgcgatgaggcgatcgccgtccgtcgtgcgctttcggcg
gatgaactggacctgctctacgtcacgccggagcgtgctgtcaccgacggcttcgccgag
atgatcggcgacatggacatcgcactcttcgcaatcgacgaggcacattgcgtctcccaa
tgggggcacgattttcgcccggagtatcgcggcctcaattgcctggcgtcgcgctttccc
ggcgtgccgcgggttgcgctgacggccaccgccgaccaccatacgcgcgacgacatcatc
gagcggctggcgcttcagggcgcgcgggtgttcaccaccagcttcgaccggccaaatatc
gcctacgagatcgtcgaacgcgaccagccgcgccagcagctcctgcgcttcctgtcgcgc
ttcaaggactcgagtggcatcgtctattgcctgtcgcgcgccaaggtcgaggacacggcg
gagtggctgacagggcagggcattcgcgcccttccctatcacgccggcatggatcgcgct
ttgcgcgatcggcatcaggatgccttcctgaaggaggaaaacctctgcctggtggcgacc
gtcgcctttgggatggggatcgacaagccggacgtgcgttatgtcgcccatctcgacatg
ccgggttcggtcgaggcctattaccaggagacgggaagggcagggcgcgacgggctgccg
tcggaagtctggatggcctatggcatggccgacgtcatccagcgccggcgcatgatagac
gagggcggcgcgccggacgagatcaagcgcatcgaacggtcaaagctcaacagcttgctt
gcgatctgcgagacggtcggttgccgccgccaggcgatccttgcgcatttcggcgaggcg
catcccggccgctgcagccattgcgacacatgcctgaagccggtcgaaacctgggacggc
acggaagcggcgatcaaggcactcgccgccgtctatcggaccggcgagcggttcggcacc
gggcacgtcatcgacgtgctgatggggaccgtcaacgacaagaccgagcgcttcggccat
gccgatatgccggtcttcggcgccggcaaggacctgccggcgcgcacctggcaatcggtt
ttccgccaattgctggccgcagggctgatcaccgtcgatcatgccgccttcggtgcaatg
aagctcgagcccgaggcgcgcgctgttttcaagcgcgagcgacaggtgctcttccgcaag
gatcggcccagttccggcaaggcgcgcgggcagaaatcgacatcggctcgcgagcgttcg
gatctcgccggttccgacctcgagcttttcgagaagctgcgggcggagcggttttcgatc
gcgaaggaattgaacgtcccgccctatgtggtcttcccggacacgaccttgatcgccctc
gccaagcagcgaccccgcgatttcgacgacctcctcgacatacccggcatcggcgaaagc
aagcgcgagcgctacggcgaggcctttctggcggtgatcgatgcttttgaggagggcggc
tga
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