Sinorhizobium fredii HH103: SFHH103_02270
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Entry
SFHH103_02270 CDS
T01731
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFHH103_02270 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfh03019
]
SFHH103_02270 (rhlE)
Enzymes [BR:
sfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SFHH103_02270 (rhlE)
Messenger RNA biogenesis [BR:
sfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SFHH103_02270 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CCE96765
UniProt:
G9A935
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All DBs
Position
2436007..2437539
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AA seq
510 aa
AA seq
DB search
MSTFKELGLSQDILATLSANGFEKPTPIQTQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKVGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKRS
LTDNPDGLSLVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQHRGNGGGQHRGNGGGQRRDGGRPPRR
SAHETPTSGFAGDDLLRDDRPQKHERRDHRVAGTGHHDGRTEGNRNHENRKHHGRPAPKQ
DGRRHGDGQPGNRGGRGQGMRRADNGGRQG
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgtccactttcaaagagcttggtctctcgcaggacatcctggcgaccctctccgccaat
ggcttcgagaagccgacgcccattcagacgcaggccattccgcttgtcctcaagggtcat
gacctcatcggtctcgcccagacgggcaccggcaagacggccgccttcggcctgccgatg
atcgagaagctcgtcgccgacggcaagcgccccgacccgcgcaacatccgcgccctcgtg
cttgcccccacccgcgaactcgtcaaccagatcgccgccaacctcaagctcttcgtgaag
aagagcccgctgaaggtcggcgtcgtggtcggcggcgtctcgatcaacaagcaaaccgaa
cagctcgcccgcggcgtcgacattctcgtcgcaacacccggccggctgctcgacctcgtt
gcccgcaaggccgtgacgctgacgcagggccgctacctcgtgctcgacgaggccgaccag
atgctcgacctcggcttcatccacgacctgcgcaagatttcgaagctggtgccgaagaac
cgacagacgctgctcttctcggcaacgatgccgaagctgatcgccgagcttgccggcgag
tacctgaccgatccggtcaaggtcgaggtcacgcctcccggcaaggccgctgacaaggtt
gagcaatatgtccatttcgttccaggcaaggatctgaagacgacgatcctgaagcggtcg
ctgaccgacaatcccgatggtctgtcgttggtcttcagccgcacgaagcatggcgccgag
aagctgatgaagcatctggaccatgtcggcttcaaggctgcttcgatccatggcaacaag
agccagggccagcgcgaacgggcgctgaaaggtttccgcgatggcgaaatccgcgtgctc
gtcgccaccgacgtcgccgcccgcggcatcgacatccctggtgtcactcacgtctacaac
tatgacctgccggaagtgccggatgcctatgtgcatcgtatcggccgcacggcccgcaac
ggccgtgatggcatagcgatcgctttctgcgcgccggatgagatccgtcttcttcgcgac
atcgaaaagctgatgggcatccagatcgccgtcgccagcggcgaggcgccagccgaccag
gcccgcccctccaagggtcgcggcggtcgcggcaacggccaacatcgcggcaacggcggt
ggtcagcatcgcggcaatggcggtggccagcgtcgcgacggaggtcgcccgcccaggcgg
tcggcgcacgagacgccgacgagtgggtttgccggcgacgatctgctgcgcgacgaccgc
ccgcaaaaacacgagcgccgtgatcaccgcgtcgcgggcaccggccatcacgacggccgg
acggaaggcaaccgcaatcacgaaaaccggaagcaccatggccgcccagccccgaagcaa
gacggccggcgccacggtgacggccagcccggcaatcgcggtgggcgcggtcaaggcatg
cgccgcgccgacaatggcggccgccagggctga
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