Sinorhizobium fredii HH103: SFHH103_02797
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Entry
SFHH103_02797 CDS
T01731
Name
(GenBank) putative ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SFHH103_02797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_02797
Enzymes [BR:
sfh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SFHH103_02797
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SFHH103_02797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCE97289
UniProt:
G9ABJ8
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All DBs
Position
3010523..3013120
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AA seq
865 aa
AA seq
DB search
MAARSEPLSEYNRRRDFTKTREPKGAVARTHAGRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLNPEDKRLAIRTEDHPLAYGDFEGTIPEGEYGGGTVMLWDTGWWEPEGDPS
KGLKKGKLSFKLHGSRMKGGWALVRMRPRDGEKRENWLLVKETDEIASEDGENLIKENIT
SVVTGRAMDEIAGGKGEKRARFWHSNKSTAANLKAGAIAENDNARRRSARRPSGKLPAFK
APQLATLVTKAPAGETWLNEAKFDGYRLLCAIGGGTVRCYTRNGLDWTEKFPAIAAALAE
LDCKSALIDGEVVALSDAGPSFSALQKALRTGASTRLYAFDLIELDGKDLSREPLIERKE
KLKLLLGSLGTTATVQYSEHVEGNGEHVLAAICKAGQEGIIAKEAKAPYRSGRTRSWLKV
KCTRRQEFVIGGYTPSSKKGRPFASILVGTFEGGKLIYRGGVGTGFGEKVMQELAAAFAS
RSRETPPFDSVPRERMRNAVWLKPDLVAEVDFAEFTADGHVRHGSFEGMREDKEAKAVKL
ETAKPTGAAPGAAKSKPSAKTSKASSAKGDTDVLGIHISHPDRILFQGQGITKIDLARYY
AVVAERMLPFTADHPVSLVRCPQGGQRHCFYQKHASDGFPDEIKEVPIEESSGSTENYMY
VRHAKGLVAAVQMGTLEFHIWGATIDKLETPDRLVFDFDPDPSVDFTTVKNAAVALRDEL
ADIGLQSFALVTGGKGVHVVVPLVRRASWDDAKSFAKAVAQNIADRDPDHFVATMSKAKR
KGRIFIDWLRNERGATAIAPYSSRAREGGPIATPVGWDEMERLSGANTFHIGDILERIEA
DTDPWRDIGKVKQSLTKKMMDSVAK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgcagtgaaccgctttcggaatacaatcgacgccgcgattttaccaagacg
cgcgaaccgaagggcgcagtcgctcgaacgcatgctggcaggaagcgttttctcgtccag
aagcacgacgcgacccggctgcactacgatttccgcctcgaatgggagggcgtcctgaag
agctgggccgtcacccgcggtccaagcctcaacccggaggacaagcgcctcgccatccgc
accgaggatcaccccctcgcctatggcgacttcgagggcacgataccggaaggagagtat
ggcggcggcacggtgatgctctgggataccggctggtgggagccggaaggtgacccatcg
aaaggtctgaagaagggcaagctttcgttcaagctgcatggcagccgaatgaaggggggc
tgggcgctggtgcgcatgcggccgcgcgacggcgagaagcgcgaaaactggctgctcgtc
aaggagacggacgagatcgcctccgaggacggcgagaacctgatcaaggagaacatcacc
agcgtagtgacgggccgcgcgatggacgagatcgccggcggcaagggtgaaaaacgggcg
cgcttctggcattccaacaagagcacggcggccaacctcaaggccggcgcaattgccgag
aacgataacgctcgcaggcggtcggcgcgcagaccttccggcaagctgcccgccttcaag
gccccgcagctcgcgacgctggtaacgaaagcacccgccggcgagacgtggctgaacgaa
gccaagttcgacggttaccgcctgctatgtgccatcggtggcggcactgtccgctgctac
acccgcaatggcctcgactggaccgagaagttcccggcgattgcggccgcccttgccgag
ctcgattgcaaatccgccctgatcgacggcgaggtggtggcgctgtcggacgcgggccca
agcttttcggcgctgcagaaggccctcagaaccggcgccagcacgaggctctacgccttc
gacctcatcgaactcgacggcaaggacctcagccgcgagccgctcatagagcggaaggaa
aagctgaaacttctgctcggctcgctcggcaccaccgcgaccgttcagtacagcgagcac
gtcgagggcaatggcgagcatgtgcttgccgccatctgcaaggcgggccaggagggtatc
atcgccaaggaggcgaaggcgccctatcgcagcggtcgcacccgaagctggctcaaggtc
aaatgcaccaggcgtcaggaattcgtcatcggcggctatacgccgtcatcgaagaaaggg
cggccattcgcctcgatcctcgtcggcactttcgagggcgggaaattgatctatcgtggc
ggcgtcggtaccggtttcggcgaaaaggtcatgcaggaacttgctgccgcctttgcaagc
cgcagccgcgagacaccgcccttcgacagcgtgccacgggaaagaatgcgaaatgcagtc
tggctgaagccagatctggtggcggaggtggatttcgccgaattcaccgccgacggacat
gtccgccacggctcgttcgagggaatgcgcgaggacaaggaggcaaaggccgtgaaactg
gaaacagcaaagccgacaggcgccgcgccgggggccgcgaagagcaagccttcagccaag
acgagcaaggcgtcgtctgccaagggcgataccgatgtcctcggcatccacatctcgcat
cccgaccgcatactcttccagggccagggcatcaccaagatcgatcttgcccgctactat
gccgtggtcgcggaacggatgctgcccttcaccgccgaccaccccgtttcgctggtgcgc
tgcccccagggcgggcagcggcattgtttctatcagaagcacgcgagcgacggttttccc
gacgagatcaaggaggtgccaatcgaggaatcgtcgggcagcaccgagaactacatgtat
gtgcggcacgccaaggggctggtggccgctgtgcagatgggtacgctcgagttccatatc
tggggcgcgacgatcgacaagctggaaacgcctgaccggttggtcttcgatttcgacccc
gatccgagcgtcgacttcacgaccgtgaagaacgccgctgtcgccctgcgcgacgagttg
gcggacatcggcctgcagtccttcgcgctggtgactggcggcaaaggcgtccatgtggtc
gtgccgcttgtccggcgagccagctgggacgacgcaaagagtttcgccaaggccgtggcg
cagaacatcgcagatcgcgatcccgatcatttcgttgccaccatgtcgaaggcgaagcgg
aaggggcgaatcttcatcgactggctgagaaacgagcgcggcgccacggcgatcgccccc
tattccagccgcgcccgcgaaggcggaccgatcgccacgccggtcggttgggatgagatg
gaacggctgagcggggccaacaccttccacatcggcgatattctcgagcgcatcgaagcg
gacaccgacccgtggcgcgacatcggcaaggtcaagcagtcactcacgaagaagatgatg
gattcggtcgcgaagtaa
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