Sinorhizobium fredii HH103: SFHH103_03266
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Entry
SFHH103_03266 CDS
T01731
Symbol
ligT
Name
(GenBank) ligT
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sfh
Sinorhizobium fredii HH103
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfh03016
]
SFHH103_03266 (ligT)
Enzymes [BR:
sfh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SFHH103_03266 (ligT)
Transfer RNA biogenesis [BR:
sfh03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SFHH103_03266 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
CCE97758
UniProt:
G9A2J3
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All DBs
Position
3530184..3530771
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AA seq
195 aa
AA seq
DB search
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTANEIIDGLDR
IERPEFQLQLTGTGAFGSKKPHSVWAGVSNNPDMFALQAEIERICQRLGLPPDPRKFTPH
VTLARLRASRVDDVVEYLSGRGNFMTAPFIVPRFVLLSSRDSVGGGPYLTEEVFPLQEGR
SSFASSEEQPASNVW
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactattcaccgccctcgaaattccgcgcaatgcagcaatgagcctttcactg
ctgcgcggaggtcttcccggagctcgatggatcgatgtggagaactaccacatcaccctg
cgtttcatcggcgacgtcgactggcgcaccgccaatgaaatcatcgacgggctcgaccgc
atcgaacggcccgaattccagcttcaactgaccggcaccggcgccttcggctcgaagaaa
ccgcattcggtctgggccggtgtcagcaacaacccggacatgttcgcgctgcaggcggaa
atagaacgcatctgccagcgtctcggcctgccgccagacccgcgcaagttcacgccgcac
gtgacgttggcgcgactacgcgcctcacgtgtcgacgatgtcgtcgaatatctatcaggg
cgcggcaatttcatgaccgcgccctttatcgttccgcgcttcgtcctgctgtcctcacgc
gactcggtcggcggcgggccctatctgacggaggaggtgttcccgcttcaggaagggcgc
tcgagcttcgcgagcagcgaggagcaaccggcttccaacgtctggtag
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