Sinorhizobium fredii HH103: SFHH103_03807
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Entry
SFHH103_03807 CDS
T01731
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFHH103_03807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfh03019
]
SFHH103_03807
03016 Transfer RNA biogenesis [BR:
sfh03016
]
SFHH103_03807
Enzymes [BR:
sfh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SFHH103_03807
Messenger RNA biogenesis [BR:
sfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SFHH103_03807
Transfer RNA biogenesis [BR:
sfh03016
]
Prokaryotic type
tRNA degradation factors
SFHH103_03807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
CCE98298
UniProt:
G9A5H7
LinkDB
All DBs
Position
4148376..4150529
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AA seq
717 aa
AA seq
DB search
MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH
DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVA
GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFDPEDHSA
LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHSAEEIASVFK
HLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT
GEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEA
EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVL
SDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMA
KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIA
SSSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASER
VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVAAEKGEKKDGGEAAE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagacccacaaggtagaaatcgaatgggctgggcgtccgctcaagctcgaaacc
ggcaagatcgcccgtcaggccgacggcgccgttctcgccacttacggcgaaaccgtcgtg
ctcgccacggtggtttcggccaaggcaccgaagcccggtcaggatttcttcccgctgacc
gtcaactatcaggaaaagacctatgccgccggcaagatccccggcggctatttcaagcgt
gaaggccgcccgagcgagaacgagacgctcgtctcgcgcctgatcgaccggccgatccgc
ccgctcttcccggagggctacaagaacgacacccaggtgatcatcacggtcatgcagcat
gacctggaaaacaacccggacgtcgtctcgatggtcgcagcctccgcggcgctgaccctc
tccggcattcccttcatgggcccaatcggcggagcccgcgtcggctacatcaacggcgaa
tacgtgctcaacccgcacctcgacgaaatggaagaatcctcgctggatctcgtcgtcgcc
ggcacgcaggaagccgtgctgatggtcgaatccgaggccaaggagttgccggaagacgtc
atgctcggcgccgtcgttttcggccagaagggcttccagccggtgatcgacgcgatcatc
aagctcgccgaagttgccgccaaggagccgcgcgagttcgatccggaagaccactccgct
cttgaaaatgccatgctgtcgatcgccgaagacgagctgcgcaacgcctacaagatcacc
gagaaggctgcccgctacgccgccgtcgacgccgtaaaggcgaaggtcaaggaacatttt
ctgccggaaggcatcgagaacccggcccattcggccgaggaaatcgcctcggtcttcaag
cacctgcaggccaaaatcgttcgctggaacatcctcgacaccaagagccgcatcgacggc
cgcgatctcgaaaccgtacgtccgatcgtctcggaagtcggtcttctgccgcgtacccac
ggctcggcgctcttcacccgcggtgaaacccaggcgatcgtcgttgccacgctcggcacc
ggcgaagacgaacagtatgtcgacagcctgaccggcatgtacaaagaacgcttcatgctg
cactacaacttcccgcccttctcggtcggtgaaaccggtcgcatgggctccccgggccgc
cgcgaaatcggtcacggcaagctcgcctggcgcgctatccgcccgatgctgccggaagcc
gagcagttcccctacacgctgcgcgtcgtttccgagatcaccgaatccaacggctcgtcg
tcgatggcgacggtctgcggcacctcgctggcgctgatggatgcgggcgttccgctcgcc
aagccggtcgccggtatcgccatgggcctgatcaaggaagaggaccgcttcgccgtcctc
tccgatatcctcggtgacgaagatcatctcggcgacatggacttcaaggttgccggtacc
gaagccggcatcacctcgctgcagatggacatcaagatcgagggcatcaccgaagagatc
atgggtgttgcgctcaaccaggccaagggcggccgcctgcacattctcggcgaaatggcc
aaggccatctccgagagccgcggccagctcggcgaattcgcaccgcgcatcgaagtgatg
aacattccggtcgacaagatccgcgaagtcatcggctccggcggcaaggtcatccgcgaa
atcgtcgagaagaccggcgccaagatcaacatcgaagacgatggcaccgtcaagatcgcg
tcctcgtccggcaaggagatcgaagccgcccgcaagtggatccactcgatcgtcgctgaa
ccggaagttggccagatctacgaaggcacggtcgtcaagaccgccgatttcggcgccttc
gtcaacttcttcggcgcccgcgacggcctcgtccacatttcgcagctcgcctccgagcgc
gtcgccaagacgaccgatgtcgtcaaggaaggcgacaaggtctgggtcaagctgatgggc
ttcgacgagcgcggcaaggttcgcctctccatgaaggtcgtcgaccaggcgaccggcaag
gaagtcgccgccgagaagggcgaaaagaaggacggcggcgaagcggccgaataa
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