Sinorhizobium fredii HH103: SFHH103_05634
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Entry
SFHH103_05634 CDS
T01731
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03420
Nucleotide excision repair
sfh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFHH103_05634 (uvrD)
03430 Mismatch repair
SFHH103_05634 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_05634 (uvrD)
Enzymes [BR:
sfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFHH103_05634 (uvrD)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFHH103_05634 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SFHH103_05634 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
HHH
AAA_12
Motif
Other DBs
NCBI-ProteinID:
CCF00097
UniProt:
G9AGB5
LinkDB
All DBs
Position
pSfHH103e:826753..828819
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AA seq
688 aa
AA seq
DB search
MSAAYLEKLNERQRNAVEHGVAPGVHGGGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPR
RILLMTFSRRAAAEMGRRVERICSQVLGGKAGSFADALAWAGTFHGIGARLLREHAAEIG
IDPDFTIHDREDSADLMNIVRHELGFSKTESRFPTKSTCLAVYSRAVNAEQPLDEVLRDS
FPWCSAWEKQLRELFGAYVDAKQAQNVLDYDDLLLYWAQMMGDAVLAEEAGGRFDHVLVD
EYQDTNRLQASILRAMKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPATFTPAAEVITL
DRNYRSTQPILAAANGVIELARERFTKNLWTERESAERPRLVTVRDEAVQANYVVEQVLQ
NRESGMLLKQQAVLFRTSHHSGSLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQ
NPRDRVAGFRLMQLLPGVGPQTAGRVLDAITADPEPLTALSEIPAPPRSGNDWISFVDML
LALRPGRAGWPSEIGTARSWYEPHLERIHEDAEMRKADLLQLEQIATGYPSRERFLTELT
LDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWKSVFVLNCVDGCIPSDLGVGSTAEVE
EERRLLYVAMTRAKDSLHLTTPQRFFTHGQNAQGDRHVYASRSRFIPATLLQFFECSAWP
VATPAAAGQRDAQQLRVDVRARMRGMWR
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggcatacctggagaaattgaacgaacgtcagcgcaatgccgtcgaacacggt
gtcgcgccgggcgtccatggcggtggcccgcttctcatcatcgccggcgccggctcgggc
aagaccaacacgcttgcccaccgggtcgcgcatctgatcgtcaacggcgcggatccccgg
cggatcctcctgatgaccttctcgcgccgggcggccgccgagatgggccgcagggtcgag
cgcatctgcagccaggtgctcggcggaaaggcagggagctttgccgacgcgctcgcctgg
gcgggaacgtttcacggcatcggtgcgcggcttttgcgcgaacatgcagcggaaatcggc
atcgacccggatttcaccattcacgatcgggaagacagcgccgatctcatgaacatcgtc
cggcacgagcttggcttctcgaagaccgagagccgtttcccgaccaagtcaacctgtctt
gccgtctattcgcgtgccgtcaatgccgaacagccgctcgatgaagtcctgcgcgacagc
tttccctggtgcagcgcctgggaaaagcagctgcgcgaacttttcggtgcctatgtcgac
gccaagcaggcgcagaacgttctcgattacgacgacctgctgctctactgggcacagatg
atgggcgacgccgtgctcgccgaggaggccggtggccggttcgatcatgtgctcgtcgac
gaatatcaggacaccaatcggctgcaggcttcgatcctgagggcgatgaagccggacgga
cgcggcctcacggtggtcggcgacgacgcccagtcgatctattcgttccgcgccgcgacg
gtgcgcaatattctcgattttccggcgaccttcacgcctgctgcagaggtcatcacgctc
gatcggaactaccgctcgacacagccgattctcgctgccgccaatggcgtcatcgaactc
gctcgcgaacgcttcaccaagaacctctggaccgagcgggaatcggccgaacgcccgcgc
ctcgtcaccgtgcgcgacgaggcggtccaggccaactacgtggtcgaacaggtgttgcag
aaccgcgaaagcggaatgctgttgaagcagcaggccgtgctgttccgcacctcgcaccac
agcggctcgctcgaagtggagctgacccgccgcaacattcccttcgtgaagttcgggggc
ctcaagttcctggacagcgcccatgtgaaggacatgctggcggccctgcgatttgcccag
aacccgcgcgaccgggtagccggattccggctgatgcaattgctgccgggtgtcggcccg
cagacggcagggcgggtcctcgacgcgatcaccgccgacccggaaccgctgacggcgctt
tccgagatccccgcccctccccggtccggcaatgactggatatccttcgtcgacatgctg
ctagccttgcggcccggtcgggccggctggccgtccgagatcggcacggcccgcagctgg
tacgagccacatctcgagcgaatccacgaggatgccgagatgcgcaaggccgatctcctg
cagctcgagcagatcgccaccggctatccgtcgcgcgaacgcttcctgaccgaactcacg
ctcgacccaccggacgccaccagcgatcaggccggcgtgccgctgctcgatgaggactat
ctcattctgtcgaccatccattccgccaaggggcaggaatggaaatcggttttcgtcctc
aactgcgtcgacggatgcattccctccgacctcggcgttggcagcaccgcggaggtcgag
gaggagcggcgcctgctttacgtagccatgacccgcgccaaggacagcctgcatttgacc
acgccgcaacgctttttcacgcacggccagaatgcccagggcgaccggcatgtctacgcc
tcgcgcagccgcttcatccccgcaacgcttctgcagttcttcgagtgctcggcctggccc
gtcgccacgccggccgcggctggccagcgcgatgcgcagcaattgcgcgtcgatgtccgt
gcccgcatgcgcggcatgtggcgttag
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