Streptomyces microflavus: SFUL_5134
Help
Entry
SFUL_5134 CDS
T02650
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfi
Streptomyces microflavus
Pathway
sfi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SFUL_5134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfi03400
]
SFUL_5134
Enzymes [BR:
sfi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SFUL_5134
DNA repair and recombination proteins [BR:
sfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SFUL_5134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AGK80028
UniProt:
N0D2I0
LinkDB
All DBs
Position
complement(5672122..5673021)
Genome browser
AA seq
299 aa
AA seq
DB search
MTPITEVEGRRLSLSNLDKVLYPATGTTKGEVLHYYAATVAGAILPHLRDRPVSFLRYPD
GPGGQLFFTKNPPPGTPDWVHTTPVPRSEDQAARQVMVQDLASLMWAANLVVEFHTPQWR
ADAPETADRMVFDLDPGSPATVVQCCAVALWLRERLAADGLFAYGKTSGSKGLHLLVPLE
PTPSAEVSAHAKRLAVEAESALPELALHRMKRALRPGKVFVDFSQNSASKTTATPYTLRA
RTEPTVSAPVTWDEIEGCRNPEDLVFRADGMAARLERYGDLLGPLLDPDRARPLPAGPA
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacggaggtggaggggcggcgcctctcgctcagcaacctcgacaaggtg
ctgtatccggccaccgggaccaccaagggcgaggtgctgcactactacgcggccacggtg
gcgggggcgatcctgccccatctgcgtgaccgcccggtctccttcctgcgctatccggac
gggcccgggggccagctcttcttcaccaagaacccgccgcccggtacgcccgactgggtg
cacaccacccccgtgccgcgcagcgaggaccaggccgcccggcaggtgatggtccaggac
ctggcctcgctgatgtgggcggccaacctggtggtggagttccacaccccgcagtggcgg
gccgacgccccggagaccgccgaccggatggtcttcgatctggaccccggctcccccgcc
accgtcgtgcagtgctgtgcggtggccctctggctgcgggagcggctcgccgccgacggg
ctgttcgcgtacgggaagacgtccggctccaagggcctgcatctgctggtcccgctggag
ccgaccccgtccgccgaggtgtccgcgcacgcgaagcggctcgcggtggaggcggagagc
gccctgccggaactggccctgcaccggatgaagcgcgccctgcgccccggcaaggtcttc
gtcgacttcagccagaactccgcgtcgaagaccaccgccacgccctacaccctgcgagcc
aggaccgagcccaccgtctccgcgcccgtcacctgggacgagatcgaggggtgccggaat
ccggaggacctggtgttccgggcggacggtatggccgcgcggctggaacgttacggggac
ctgctcggccccctgctcgatccggaccgggcacggccgctgcccgcgggtccggcctga
DBGET
integrated database retrieval system
