Streptomyces ficellus: EIZ62_13800
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Entry
EIZ62_13800 CDS
T06929
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfic
Streptomyces ficellus
Brite
KEGG Orthology (KO) [BR:
sfic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfic03016
]
EIZ62_13800
Enzymes [BR:
sfic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EIZ62_13800
Transfer RNA biogenesis [BR:
sfic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EIZ62_13800
Prokaryotic type
tRNA splicing ligases
EIZ62_13800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGV79209
UniProt:
A0A6I6FK60
LinkDB
All DBs
Position
complement(3125310..3126503)
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPSTVEDGAMRQLHNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDMVDPG
RLHGFPTSGWDDFWTRFDGVADAVRFRRDRAAKQMGSLGGGNHFIEFCLDESGSVWLMLH
SGSRNIGKELAEYHIGQAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
AIMMALFQDVVRKEFKKAKVTFDHVISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDFGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRKMSRSAAKRRFSTRDLEDQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggtgcccggggcgaaggtcccgatccggatgtggaccgatccttcg
acggtggaggacggcgcgatgcggcagttgcacaacgtcgccaccctgccctggatcaag
ggcctggccgtgatgcccgacgtgcactacggcaagggcgccacggtcggctcggtgatc
gccatgcgcggggcggtctgcccggcggcggtcggcgtcgacatcggctgcggcatgtcg
gcggtgaagacgtcactgacggcgaacgacctgccgggcgacctgtcccggctgcgctcg
aagatcgagcaggccattcccgtcgggcgcgggatgcacgatgacatggtcgaccccggc
cggctgcacggcttcccgacgtccgggtgggacgatttctggacgcggttcgacggtgtg
gccgacgcggtcaggttccgccgggaccgggcggcgaagcagatgggttcgctgggtggg
ggaaaccacttcatcgaattctgcctcgacgagtccggatcggtctggctgatgctccac
tccggttcccggaacatcggcaaggagctggccgagtaccacatcggccaggcgcagaag
ctgccgcacaaccaggggctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcctaccgcaacgacctcttctgggctcaggagtacgccaagtacaaccgg
gcgatcatgatggcgctcttccaggacgtggtgcgcaaggagttcaagaaggcgaaggtc
accttcgaccacgtgatctcctgccaccacaactacgtggcggaggagcggtacgacggg
atggacctgctggtcacccgtaagggcgcgatccgggcgggctccggcgacttcggcatc
atccccggctcgatgggcaccggctcgtacatcgtgaagggcctcggcaacgcggcgtcg
ttcaactcggcctcgcacggcgccggccggaagatgagccgcagcgccgcgaagcgccgg
ttctcgacgcgggacctggaggaccagacgcggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccgggtgcgtacaagccgatcgagaaggtcatcgaccagcagcgc
gacctggtggaggtcgtggcgaagctgaagcaggtggtgtgcgtcaagggctga
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