Streptomyces ficellus: EIZ62_17140
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Entry
EIZ62_17140 CDS
T06929
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfic
Streptomyces ficellus
Brite
KEGG Orthology (KO) [BR:
sfic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfic03019
]
EIZ62_17140 (hrpA)
Enzymes [BR:
sfic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EIZ62_17140 (hrpA)
Messenger RNA biogenesis [BR:
sfic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EIZ62_17140 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
NACHT
SLFN-g3_helicase
AAA_16
DUF6139
PhoH
AAA_25
ResIII
NTPase_1
MetJ
Motif
Other DBs
NCBI-ProteinID:
QGV79768
UniProt:
A0A6I6FQ90
LinkDB
All DBs
Position
complement(3811605..3815567)
Genome browser
AA seq
1320 aa
AA seq
DB search
MSTSFADLQTLLAEVSLRDAQRLGRRLEGARRIRKPEARQAVLDEIAAEAGKAAARTAER
AARLPDITYPEQLPVSQKKDDILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
IGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNPEATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEESEESDRDQITAICDAVDELQAEGPGDILVFLSGERE
IRDTADALVKKKLRNTEVLPLYARLSHAEQHRVFQAHSGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYDEDDFLARPE
FTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAIDPAQKDP
KKRLTEAGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPAEKQAQAD
QQHARFKDETSDFLTLLNLWRYLREQQKERGSSSFRRMCKAEYLNFLRIREWQDIYTQLR
TVAKQMGIHLNDEDAPDDRVHVSLLAGLLSHIGMKDVKDSGGEGGRNTAKNEYLGARNAK
FAVFPGSALFKKPPRFIMSAELVETSRLWARVNAKIEPEWIEPLAGHLLKRTYSEPHWEK
DQAAVMAYEKVTLYGVPIVAQRKVNYGRVDPEVSRELFIRNALVEGDWRTHHKFFADNRK
LLTEVEELEHRARRRDILVDDETLFDFYDRRVPEHVVSGAHFDSWWKHKRRDEPDLLDFE
REMLINERAGAVTKADYPDSWRQGALKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGF
DWQIPGLREEVVTELIRSLPKPIRRHYVPAPNFAQRFLAAAAPSPEPLTVTLARELQRMV
GVPVDAADFDLSRIPDHLKITFRIVDERRRKLAEDKDLEALKLRLRPKARQALSKAAQAA
TAGPSGSGQALERTGLTDWTIGTLTKVFETRRAGQPVKAYPALVDAGDTVSVRLFDTQAE
QAQAMWRGTRKLIMLNIPVNPAKFASDRLTNQQKLALSRNPHGSVQALFDDCATAAADRL
IADHGGPAWDEESFRKLFDKVRADLVELTIRTVDQVQQVLAAWQACERRLKATNSLVLVN
NVADVREQLAALVPPGFVTRTGLRRLPDLMRYLVAVDRRLQQMPTSVQRDTTRMEKVHEM
QDEYAWLLEQLPKGRPVPQEVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgacctccagaccctgctggccgaggtctcgctgcgcgacgcg
cagcggctcggccgccgtctcgaaggcgcccgccgcatccgcaagcccgaggcccggcag
gccgtgctggacgagatcgccgccgaggccgggaaggccgccgccaggaccgccgagcgc
gcggcgcggctgccggacatcacgtatcccgagcagttgccggtcagccagaagaaggac
gacatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgcgggtgagaccgggtcc
ggcaagacgacccagatccccaagatctgcctggagctgggacgcggcgtccgcggcatg
atcggccatacgcagccgaggcggatcgccgcccgcacggtcgccgagcgggtcgcggag
gagttgaggacgccgctcggggaggccgtcggctggaaggtgcggttcaccgaccaggtg
aacccggaggcgaccttcgtcaagctgatgacggacggcatcctgctcgccgagatccag
accgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcgcagc
ctcaacatcgacttcctcctcggctacctcgcgcagctgctgcccaggcgccccgacctc
aaggtcgtgatcacctccgccaccatcgacccggagcgcttctcccgccacttcggcgac
gcgccgatcgtcgaggtctcgggccgtacgtacccggtcgaggtccgttaccgcccgctc
ctggaggaggagtccgaggagtccgaccgcgaccagatcaccgcgatctgcgacgcggtg
gacgagctccaggccgaggggccgggtgacatcctggtcttcctctccggcgagcgggag
atccgcgacacggcggacgcgctggtgaagaagaagctgcggaacaccgaggtgctcccc
ctctacgcccgtctctcgcacgccgagcagcaccgggtcttccaggcgcactcgggccgc
aggatcgtcctcgccacgaacgtcgccgagacgtccctgacggtccccggcatcaagtac
gtgatcgacccgggcaccgcccgcatctcccgctacagccaccgcaccaaggtgcagcgc
ctgccgatcgagccgatcagccaggccagcgccaaccagcgcaagggccgctgcggccgt
acgtcggacggcatctgcatccggctgtacgacgaggacgacttcctcgcccgccccgag
ttcacggacgccgagatcctccggacgaacctggcgtcggtcatcctccagatgacggcg
gccgggctgggcgacatcgagaagttccccttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtgcagctcctccaggagctgggcgccatcgacccggcgcagaaggacccg
aagaaacgcctcaccgaggcgggccgcaagctggcccagctgccggtggacccgcggctg
gcccgcatggtcctggaggccgacaagaacggctgcgtgcgcgaggtcatggtgatcgcg
gcggcgctgtcgatccaggacccgcgcgagcgccccgccgagaagcaggcgcaggccgac
cagcagcacgcccgcttcaaggacgagacgtccgacttcctcaccctcctcaacctgtgg
cgctatctgcgcgagcagcagaaggagcgcggctcgtccagcttccgccggatgtgcaag
gcggagtacctcaacttcctgcgcattcgcgaatggcaggacatctatacgcagctgcgc
acggtcgccaagcagatggggatccacctcaacgacgaggacgcccccgacgaccgcgtc
cacgtctcgctgctcgcgggcctgctgtcccacatcgggatgaaggacgtgaaggactcc
ggcggggagggcgggaggaacaccgcgaagaacgagtacctgggcgcccgcaacgccaag
ttcgccgtcttcccgggttccgcgctgttcaagaagccgccgcggttcatcatgtcggcc
gagctggtggagacgtcccgcctgtgggcccgggtcaacgcgaagatcgaacccgagtgg
atcgagccgctcgccgggcacctgctgaagcgcacgtacagcgagccgcactgggagaag
gaccaggcggcggtgatggcgtacgagaaggtcacgctgtacggcgtgccgatcgtcgcc
cagcgcaaggtcaactacgggcgcgtcgacccggaggtcagccgggagcttttcatccgc
aacgccctggtggagggcgactggcggacgcaccacaagttcttcgcggacaaccgcaag
ctgctcaccgaggtcgaggagctggagcaccgggcgcggcgccgcgacatcctggtggac
gacgagacgctgttcgatttctacgaccggcgggtgcccgaacacgtggtgtccggggcg
cacttcgactcgtggtggaagcacaagcggcgcgacgagccggacctgctggacttcgag
cgcgagatgctcatcaacgagagggcgggcgcggtcaccaaggccgactacccggactcg
tggcggcagggcgcgctgaagttccgggtgacgtaccagttcgagccgggtgcggacgcg
gacggcgtcaccgtccacatcccgctccaggtgctgaaccaggtgacggacgagggcttc
gactggcagatcccgggcctgcgggaagaggtcgtcacggagctgatccgctccctgccg
aagccgatccgccgccactacgtcccggcgccgaacttcgcgcagcggttcctggccgcc
gcggcgccgtcgccggagccgctgacggtgacgctcgcccgtgagctccagcggatggtc
ggcgtcccggtcgacgcggccgacttcgacctgtcccggatccccgaccacttgaagatc
accttccggatcgtcgacgagcggcgccgcaagctcgccgaggacaaggacctggaggcc
ctcaagctccgcctgcgccccaaggcccggcaggcgctgtccaaggcggcccaggccgcc
acggcgggcccctcgggctccggacaggccctggagcggacggggctgacggactggacg
atcggcaccctgacgaaggtgttcgagacgcggcgggcgggccagcccgtcaaggcgtac
ccggcgctggtggacgctggcgacaccgtctccgtacggctcttcgacacccaggccgag
caggcgcaggcgatgtggcgcggcacccgcaagctgatcatgctgaacattccggtgaac
ccggcgaagttcgcgtccgacaggctgacgaaccagcagaagctcgccctgtcccgcaac
ccgcacggctcggtgcaggccctgttcgacgactgcgccaccgccgccgccgaccggctg
atcgccgaccacggcggcccggcgtgggacgaggaatcgttccgcaagctgttcgacaag
gtgcgggccgacctggtggagctgacgatccgcacggtggaccaggtgcagcaggtcctc
gccgcctggcaggcctgtgagcgccgcctgaaggccacgaacagcctggtgctggtgaac
aacgtggcggacgtgcgcgagcagctggcggcgctcgtgccgcccggcttcgtgacccgg
accggtctgcgccggctgccggacctgatgcgctacctggtggcggtggaccgccggctc
cagcagatgccgacgtccgtccagcgcgacaccacgcgcatggagaaggtccacgagatg
caggacgagtacgcctggctgctggagcagctgccgaagggccggccggtgccgcaggag
gtcctggacatccgctggatgatcgaggagctgcgggtcagctacttcgcccacgcgctg
ggcacggcgtacccggtctccgacaagcggatcgtgaaggcgatcgacgccgcggcaccg
tga
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