Streptomyces finlayi: F0344_01750
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Entry
F0344_01750 CDS
T09573
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfiy
Streptomyces finlayi
Pathway
sfiy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F0344_01750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfiy03400
]
F0344_01750
Enzymes [BR:
sfiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F0344_01750
DNA repair and recombination proteins [BR:
sfiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F0344_01750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
GAAD
Motif
Other DBs
NCBI-ProteinID:
QNE79016
UniProt:
A0A7G7BUK1
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All DBs
Position
343529..344467
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AA seq
312 aa
AA seq
DB search
MLATPGALPPPALQEKFGFEVKQDGQRAMIYLPGNGNVSLRARSGAEITAAYPELAALGS
ALDRPAVLDGEIVAFDNQGRSDFELLQSRMGLTGSPAKAARMAQRVPAHLVLFDIVFLDA
RTITKLPYSERREVLEGLGLTGSHWSTPAFVTGHGTQALDMTKTAGLEGLVAKRLKSIYE
PGARSRAWIKIRHVRTLDVIVGGWVPGRGRLTGLPGALLVGEHGEHGEHGLRYAGSVGTG
WSDTERATLAELLHTATIDHCPFTEVPPVAGARWVLPRIVGEVRYATRTRAGRLRQPSWH
RLRPDLTPDDIP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccacaccaggcgccctcccgcccccggcactccaggagaagttcgggttcgag
gtcaagcaggacggccagcgagccatgatctacctgcccggcaacgggaacgtgtccctg
cgagcacgctccggggcagagatcaccgccgcctacccggaactcgcggccctaggctcc
gcactcgaccgacccgccgtcctggacggtgagatcgtcgccttcgacaaccaggggcgc
agcgacttcgagctgctgcagtcccggatggggttgaccggatcacccgccaaagcggcc
cgcatggcacagcgggtaccagcccacctcgtcctcttcgacatcgtcttcctcgatgcg
aggaccatcacgaagctgccctactccgagcgccgagaggtactcgaagggctcggactc
acaggctcgcactggtcgacacccgcgttcgtcacaggccacgggacccaggccctggac
atgacgaagaccgccggtctggaaggactcgtcgccaagcgcctcaagtcgatctacgaa
ccaggggcgcgctcccgtgcgtggatcaagatccgtcacgtccggaccctggacgtcatc
gtcggtggatgggtacccgggcgcggccgactcaccggcctgcccggtgccctgctcgtc
ggcgagcacggcgagcacggcgagcacggactgcggtacgcagggagcgtcggcaccggc
tggagcgacaccgaacgcgcaacactggccgagctcctccacaccgccacgatcgaccac
tgcccgttcaccgaggtcccaccggtggccggagcccgctgggtgctgccacgcatcgtc
ggcgaagtccgctacgcgacccgcacccgggcaggacgcctacgccagccctcctggcac
cggctacgccccgatctcacgcccgacgacatcccctga
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