Streptomyces finlayi: F0344_24970
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Entry
F0344_24970 CDS
T09573
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfiy
Streptomyces finlayi
Pathway
sfiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0344_24970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfiy03019
]
F0344_24970
03009 Ribosome biogenesis [BR:
sfiy03009
]
F0344_24970
Enzymes [BR:
sfiy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F0344_24970
Messenger RNA biogenesis [BR:
sfiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F0344_24970
Ribosome biogenesis [BR:
sfiy03009
]
Prokaryotic type
rRNA processing factors
F0344_24970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QNE77414
UniProt:
A0A7G7BPZ9
LinkDB
All DBs
Position
5410682..5414905
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AA seq
1407 aa
AA seq
DB search
MLEPTEPGTNGNTEDSNSPGDKLPPRRRRRAASRPEGPPTGAPGTAVAEDVASAIPADDA
AQSATTGTDDAAPPRARRRAVRKATAPAGAPGATSETAEAAAAPAAVETPVTVEAAAPAE
AEASAAPPRARRRAVRKATASAGAPQTAAESVTEQAPAEPAAEPAADITEASEAAEAPAA
PRGRRRAVRKATAPAGAPQSAETPAVVEAPAVVEEPAAPVEEPAAVPVVEAPRGRTRRRA
SAPAGTPQAEAPAEPETVVEPVAEAPATAAAVEAPQADAAPPRGRRRAVRKATAPAGAPQ
SAETPAVAEDVVETGETLPAAVAEELAAEPEQVEEAAPRGRQRRRATATAGRPEFTGKVE
EPVRRSRRAERPAVAVFQAPVFAEPMFQTPETAAAAAAATGPEAEQDEVEEAEQAPVAES
ATAETVEQPAEPAEAAPQGGSRRRRRRRGEAAEAAEAEPVAAGPIGLPVEEPVEEEPEAE
ADAEHEGEETDEYGDRPSRRRRRGGRRRRRGESNDLDDAEHGEEAPADRSEDEGGRTKEH
DDHDGDNEDEDDDSASGSSSSRRRRRRRRRSGESAAEADNGVDDPERTVVKVREPRERRA
KEAEREPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVM
VVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRN
AVLYAGEVNFEALGMAHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLV
YVPEGSMTGISRKLPDTERSRLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQEQ
WEDIQRKSKNSGSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWDTIHGYVSQV
APDLTDRLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK
FTGQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECL
GRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTMAGGGGG
GKRAKKRGRVGVDQVHEHDHEQADEHESEHEHESEAEVAAEVAAPVALPEPEFVPDEELY
SSPAEAEAAAGRRGRRRATRKVSAPAGTPKAAAERVRAPEPVAEPEPVVEPEPVVETPVA
APAAEAEAPVQGRTRRRATRKATAPAGSPKQAETVEPVAEEDPVVGSPVVSVPVEEPVAE
APVAAEAEAPAPVAAPRVRRRATRKATAPAGSPAGAEEAEVVVVTAGPAAEAASEAASGT
ASDTPETDAETDAETETEAEAPAKKTARKAAAKKAPAKKAAAKKTVAKKTAAKKTTAKKA
ASKKTVAAEQSSPSVTASAPASPAESE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagccgaccgaacccggaaccaacgggaacaccgaagacagcaacagccccggc
gacaagctgccgccgcgccgcaggcgccgcgctgcctcgcgtcccgagggaccgccgacc
ggcgcgccgggaacggcagtcgccgaggacgtcgcgtcggccataccggccgatgacgcc
gcgcagtccgcgaccaccggcacggacgatgccgcacctccgcgtgcccgccgccgtgcg
gtccgcaaggcgaccgctccggcgggagcccccggcgcgacctccgagaccgctgaggct
gctgcggcccctgcggccgtagagacccctgtgacggtcgaggccgcagcgcccgccgag
gccgaggcgtccgccgccccgccgcgtgcccgccgccgtgcggtccgtaaggccacggct
tcagccggtgcgccgcagaccgccgccgaatccgtgaccgagcaggccccggccgagccg
gccgccgagccggccgcggacatcactgaagcatccgaggcagccgaggccccggcggct
ccgcgtggccgccgccgtgccgtgcgcaaggcgaccgctccggcgggcgccccgcagtcc
gccgagacccccgcagtcgtggaggcccccgcagtcgtggaggagcccgccgcccccgtc
gaggagccggcagccgtaccggtcgtcgaggccccccgtggccgtacccggcgccgcgcg
tcggcccctgccggtacgccgcaggccgaggcacccgccgagcccgagacagtcgtggag
ccggttgccgaggcccccgcgacggccgcggccgtcgaagcgccccaggccgatgccgca
cctccgcgtggccgccgccgtgcggtccgtaaggcgaccgctccggcgggcgccccgcag
tccgccgagacccccgctgtcgcggaggatgtcgtcgagaccggcgagacccttcccgca
gccgtggccgaggagctcgccgccgagcccgagcaggtcgaggaggccgccccgcgcggc
cgccagcgccgcagggccaccgcgacggccggcaggccggagttcaccggaaaggtcgag
gagcccgtccgtaggagccgtcgcgcggagcgtccggccgtggccgtcttccaggccccg
gtcttcgccgagccgatgttccagaccccggagaccgcagccgccgcagccgccgccaca
ggtcccgaggcggagcaggacgaggtcgaggaggccgagcaggcccccgtggccgagtcc
gccaccgccgagacggtggagcagccggcggagcccgccgaggccgcgccgcagggcggc
tcgcgccgtcgtcgccgtcgccgcggtgaggccgccgaggccgccgaggccgagccggtc
gcagcgggccccatcggccttccggtcgaggagcctgtcgaggaagagcccgaggccgag
gcggacgccgagcacgagggcgaggagacggacgagtacggggaccggccttcgcgccgt
cgccgtcgtggtggccgtcgccgccgtcgtggtgagagcaacgacctggacgacgccgag
cacggcgaagaggcccccgcggaccgttccgaggacgagggcgggcgcaccaaggagcac
gacgaccacgacggcgacaacgaggacgaggacgacgactcggcctccggctccagcagc
agccgtcgccgtcgtcgccgtcgccgtcgcagcggtgagtccgcggccgaggccgacaac
ggtgtggacgacccggagcgtacggtcgtcaaggtccgcgagccgcgtgagcgccgtgcg
aaggaagccgagcgcgagccgggcaccgggttcgacgaggtccagtccatcaagggctcg
acccgtatggaggccaagaagcagcgccgccgcgaaggccgcgagcagggccgccgccgg
gtgccgatcatcaccgaggcggagttcctggcacgccgcgaggccgtcgagcgggtgatg
gtcgtccgtcagagcggcgagcgcacccagatcggcgtcctcgaggacaacgtgctcgtc
gagcactacgtcaacaaggaacaggccaccagctacgtcggcaacgtctacctgggcaag
gtgcagaacgtactgccgtccatggaggccgcgttcgtcgacatcggcaagggccgcaac
gccgtgctgtacgccggtgaggtgaacttcgaggcgctcgggatggcccacgggccccgc
cgtatcgagtccgcgctgaagtccggccagtcggtcctcgtccaggtgacgaaggacccg
atcggtcacaagggtgcccgcctgaccagtcaggtgtcgctgcccggccgctatctggtc
tacgtgcccgagggctcgatgaccgggatcagccgcaagctgcccgacaccgagcggtcc
cgcctgaagacgatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcacc
gccgccgagggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctgcaggagcag
tgggaggacatccagcggaagtcgaagaacagcggcagctccaacgcgccgacgctgctc
tacggcgagccggacatgacggtccgggtggtccgcgacatcttcaacgaggacttctcg
aaggtcatcgtcagcggtgacgaggcgtgggacacgatccacggctatgtctcgcaggtg
gcaccggacctgacggaccggctgtcccgctggacctcggaggtcgacgtcttcgcgacg
taccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctatctgccgagcggc
ggctcgctggtgatcgacaagaccgaggcgatggtcgtcgtcgacgtcaacaccggcaag
ttcaccgggcagggcggaaacctcgaggagaccgtcaccaagaacaacctggaggcggcc
gaggagatcgtgcgtcagctgcggctgcgcgacctcggtggcatcgtcgtcgtcgacttc
atcgacatggtgctggagtccaaccgggacctcgtgctgcggcgtctgttggagtgcctg
ggccgtgaccgtacgaagcaccaggtcgccgaggtcacttcgctcggcctggtccagatg
acccgcaagcgggtcggccagggtctgctggagtccttctccgagacctgtgtccactgc
aacggacgcggtgtcatcgtccacatggagcagccgaccatggccggcggcggtggtggt
ggcaagcgcgccaagaagcgtggccgcgttggtgtggaccaggtccacgagcacgaccac
gagcaggccgacgagcacgagagcgagcacgagcacgagagcgaggccgaggtcgcggcg
gaggtcgccgctccggtggcgctgcccgagccggagttcgtccccgacgaggagctgtac
agcagcccggccgaggccgaggcggccgcgggccgtcgtggccgtcggcgcgcgacccgg
aaggtgtcggctccggccggcaccccgaaggccgcggccgagcgagtgagggcacccgag
ccggtggccgagcccgagccggtcgtcgagcccgagccggtcgtcgagaccccggtggcc
gctccggccgccgaggccgaggcgccggtccagggccgtacgcgtcgccgtgcgacccgt
aaggcgaccgcacccgcgggttcgccgaagcaggccgagacggtggagccggtcgccgag
gaggaccctgtcgtcgggtcacctgtcgtctcggtcccggtcgaggagcctgtcgccgag
gcgcccgtggccgccgaggccgaggccccggctccggtcgcggcaccgcgtgtgcggcgc
cgggccacccgtaaggccaccgcaccggcgggctcgcccgccggcgccgaagaggcggag
gtcgtcgtggtgacggccgggcccgcggccgaagccgcttcggaggccgcctccggcacc
gcttccgacacgccggagacggacgcggagacggacgccgagaccgagacggaagcggag
gcgccggccaagaagacggcccgcaaggccgccgccaagaaggctccggccaagaaggcg
gcagccaagaagacggtcgccaagaagaccgccgcgaagaagacgaccgcgaagaaggcc
gcctcgaagaagacggtggccgccgagcagtcgtcgccctccgtgacggcttcggccccg
gcctcgcccgccgagtccgagtag
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