Serratia ficaria: SAMEA4384070_0125
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Entry
SAMEA4384070_0125 CDS
T06444
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sfj
Serratia ficaria
Pathway
sfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384070_0125 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfj03021
]
SAMEA4384070_0125 (rho)
03019 Messenger RNA biogenesis [BR:
sfj03019
]
SAMEA4384070_0125 (rho)
Transcription machinery [BR:
sfj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAMEA4384070_0125 (rho)
Messenger RNA biogenesis [BR:
sfj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMEA4384070_0125 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
SNV80255
UniProt:
A0A240AA79
LinkDB
All DBs
Position
1:146050..147309
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgcatgcgcaagcaggacatcatcttctccattctgaag
cagcatgcgaaaagcggagaagacatcttcggcgacggcgtgctcgagatattgcaggat
ggatttggtttcctccgttccggagacagttcctacctcgccggccccgacgacatctat
gtatcccctagccaaatccgccgtttcaacctccgtacaggtgacaccatttccggtaag
attcgaccgccaaaagaaggcgagcgctattttgccctgttgaaagttaacgaagttaac
tatgacaaaccggaaaacgcccgcagcaagatcctgttcgagaacttgaccccgctgcac
gccaattcccgtctgcgcatggagcgcggcaacggctctaccgaagacctgacggcgcgc
gtgctggatctggcatcgccgatcggtcgcggccagcgtggcctgatcgtcgcgccgccg
aaagccggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcctacaaccaccca
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagttaccgagatgcag
cgtctggtgaaaggcgaagtgatcgcctcgaccttcgacgaaccggcttcccgtcacgtg
caggtagcggaaatggtcatcgagaaggccaagcgcctggttgagcacaaaaaagacgtg
atcatcctgctcgactccatcacccgtctggcgcgcgcctacaacaccgtggtgccggcc
tcgggcaaggtgctgaccggcggtgtggacgccaacgccctgcaccgtccgaagcgtttc
ttcggcgcggcgcgtaacgttgaagaaggcggcagcctgaccatcatcgctaccgcgctg
gtggataccgggtcgaaaatggacgaggttatctacgaagaatttaaaggtaccggcaac
atggaattgcacctggcgcgtaaaatcgccgagaagcgcgtattccctgccatcgattac
aatcgctccggtacccgtaaagaagagttgctcaccacctctgaagaactgcaaaaaatg
tggatcctgcgcaaaatcattcatccgatgggtgagatcgacgcgatggagttcctcatt
aataagttggcgatgactaaaaccaacgatgaattcttcgatatgatgaaacgctcataa
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