Serratia ficaria: SAMEA4384070_0614
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Entry
SAMEA4384070_0614 CDS
T06444
Symbol
hcaR_2
Name
(GenBank) Hca operon transcriptional activator
KO
K17737
LysR family transcriptional regulator, carnitine catabolism transcriptional activator
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfj03000
]
SAMEA4384070_0614 (hcaR_2)
Transcription factors [BR:
sfj03000
]
Prokaryotic type
Helix-turn-helix
LysR family
SAMEA4384070_0614 (hcaR_2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
PBP_like
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
SNV86696
UniProt:
A0A240AV00
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Position
1:complement(665892..666824)
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AA seq
310 aa
AA seq
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MKMSIKQLRAFLAVAHTLNFAQASERLNISQPALSLAIRGLEEALGGPLLLRTTRRVALT
PEGESFFPMARQLLADWDNAEEAMRQRFTLQRGKVAIAAMPSFAGNPLPPILKAFRDRYA
GINVAVHDVINEQVFEMIREGRVEMGIAFEPEPSDSLHFTPLCSDRFMAVVPKDSALAHR
AQVSWKELLTLDFITLQRPSAVRLLLEQELARSGRKLEVAFESHQLVTVGRMVANGLGAS
AVPALCERQMGELGAVCVPLFGPLIERRVGLIRLAQHQLSSAAQALATVIEREMAGSNGT
VSKHPPGELQ
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgagcatcaaacagttacgcgcgtttttagcggtagctcacactcttaacttc
gcccaggccagcgagcggctgaatatttcccagccggcgctcagcctggcgatccgcggg
ctggaagaggcgctgggcggcccgctgctgctgcgcaccacccgccgggtagcgctgacg
ccggagggggaaagcttcttcccgatggcgcgccagctgctggcggactgggacaatgcg
gaagaggcgatgcgccagcgtttcaccctgcagcggggcaaggtggcgatcgccgccatg
ccgtcgttcgccggcaacccgctgccgccgatcctcaaggcgttccgcgatcgttacgcc
ggcatcaacgtggcggtgcacgacgtgattaacgagcaggtgtttgaaatgatccgcgaa
ggccgggtggagatgggcatcgccttcgaaccggagccgagcgacagcctgcacttcacc
ccgctgtgcagcgaccggtttatggcggtggtaccgaaggattcggcgctggcgcaccgg
gcgcaggtgagttggaaagagctgctgacgctggatttcatcaccctgcagcgcccttcg
gcggtgcgcctgctgctggagcaggagctggcccgcagcggcagaaagctggaagtggcg
ttcgaaagccatcagctggtgacggtcggccgcatggtggccaacggcctcggcgccagc
gcggtgccggcgctgtgcgaacggcagatgggcgagctgggggcggtgtgcgtgccgctg
tttggcccgctcatcgaacggcgggtgggcctgatccgcctggcgcagcatcagctctct
tccgccgcccaggcgctggcgacggtgatcgagcgggaaatggcggggagtaacggcacg
gtcagtaaacatccgccaggcgaactacagtaa
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