Serratia ficaria: SAMEA4384070_0823
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Entry
SAMEA4384070_0823 CDS
T06444
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfj03009
]
SAMEA4384070_0823 (rlmD)
Enzymes [BR:
sfj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SAMEA4384070_0823 (rlmD)
Ribosome biogenesis [BR:
sfj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SAMEA4384070_0823 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
CMAS
Methyltransf_11
FtsJ
DHDPS
Ribosomal_L22
NIR_SIR_ferr
Methyltransf_23
DOT1
Motif
Other DBs
NCBI-ProteinID:
SNV88722
UniProt:
A0A240AZ43
LinkDB
All DBs
Position
1:893004..894350
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AA seq
448 aa
AA seq
DB search
MAQFYSPKRRVTTRQSLQILTVTVSDLDPFGQGVARHNGKAVFVAGVLPGEQAEIQLTED
KRQFAKGKLKRLLTRSPQRVEPRCPHFGVCGGCQQQHADEALQQQSKAAALVRMIARETG
VTPPQEPVIAGPQYGYRRRARLGLAWQPKLQRLAMGFRQAASSELVPVSHCPVLRPELEQ
LLAPLRDCLSGLQAVRRLGHAELVLADNGPVLVLRHLDALKEEDRQALLAFAQQKSVTIY
LAPDSDRLEKLCGETPYYQVDGLRLDFSPRDFIQVNDAVNQQMVAQALEWLEVQPNDRVL
DLFCGMGNFTLPLARRAAAAVGIEGVATLVANGQYNAHKNMLNNASFFHENLEEDVARQP
WAAQGFDKVMLDPARAGAAGVMSHIVKLAPGRVVYVSCNPTTLARDSKVLLDAGYRLARV
RMLDMFPHTGHLESMALFINDTAPEVAA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctcccaaacgccgcgtgacgacccggcagagcttacaaatattg
accgtgacggtcagcgacctcgatcccttcggccagggcgtggcgcgccacaacggcaag
gcggtgttcgtggcgggcgtgttgcccggcgaacaggcggaaattcagctgacggaagac
aagcgtcagttcgccaagggcaagctgaagcgtctgctgacccgcagcccgcagcgggtt
gaaccgcgctgcccgcactttggcgtttgcggcggttgccagcagcagcatgcggatgag
gcgctgcagcagcagagcaaagcggcggcgctggtgcgcatgatcgcccgcgaaaccggc
gttacgccgccgcaggagccggtgatcgccgggccgcaatacggctatcgccgccgcgcc
cgcctgggcctggcctggcagccgaagctgcagcggctggcgatgggctttcgccaggcg
gcctccagcgagctggtgccggtgagccattgcccggtgctgcgtcccgaactggaacag
ctgctggcgccgctgcgcgattgcctgagcgggttgcaggccgtgcggcgtctgggccac
gccgagctggtgttggcggacaacgggccggtgctggtgctgcgtcatctcgacgcgctg
aaggaggaggatcgccaggcgctgctggcgtttgcgcagcaaaaaagcgtaaccatttat
ttggcgccggacagcgatcggctggaaaaactgtgcggtgaaacgccgtattatcaggtc
gacgggctacgcttagacttcagcccgcgggacttcattcaggtcaatgacgcggtaaat
cagcaaatggtggcgcaggcccttgaatggctcgaggttcagcccaatgatcgggtattg
gacctgttctgcggcatgggcaactttaccctgccgctggcgcggcgcgccgcggcggcg
gtgggcatagaaggtgttgccacgctggtggcgaatgggcaatataatgcacataagaat
atgctgaataatgcctccttcttccacgagaacctggaggaggacgttgcgcggcaacct
tgggcagcacaaggatttgataaagtgatgctggatcctgcccgtgccggtgcggctgga
gtgatgtcacacattgtaaaactggcgccagggcgggtggtttacgtttcctgtaacccc
accacgctggctcgcgacagcaaagtgttgctggacgccggttatcgtcttgcgcgcgtg
cggatgctggatatgtttccgcacacggggcatcttgagtcaatggcgctgtttatcaac
gacactgcgccagaggtcgctgcatag
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