Serratia ficaria: SAMEA4384070_1371
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Entry
SAMEA4384070_1371 CDS
T06444
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sfj
Serratia ficaria
Pathway
sfj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4384070_1371 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_1371 (uvrB)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4384070_1371 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMEA4384070_1371 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
SBDS_domain_II
IF2_N
zf-C4H2
DUF87
Motif
Other DBs
NCBI-ProteinID:
SNV96591
UniProt:
A0A240BL20
LinkDB
All DBs
Position
1:1442013..1444025
Genome browser
AA seq
670 aa
AA seq
DB search
MSKIFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQ
YSRNDQAFQRATFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQIEQVVPR
FTIYPKSHYVTPRERIIQAMEEIKVDLADRRKVLLANNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMFKGDRSRKET
LVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDLVDQVVRPTGLLD
PVVEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITDSMAKAIGETERRRAKQQAYNEENGIVPQGLNKKIGDILQLG
QPGNRSRNKGKGKAAESAAQYQNLTPKALDQKIRELEGQMYTHAQNLEFEQAAALRDEIH
QLREQFIAIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaattttcaaactgcattctgatttcaaaccggccggcgatcagccggaagcc
atccgcaagctggaagaagggctggaagacggcctggcgcaccagacgctgctgggggtg
acaggttcgggcaagaccttcaccatcgccaacgtgatcgccgatctgaatcggcccacc
atggtgctggcgcctaacaagacgctggcggcgcagctgtatggcgagatgaaagagttc
ttccccgagaatgcggtggagtattttgtttcctactacgactactaccagccggaggcc
tacgttcccagctccgacaccttcattgaaaaagacgcctcggtgaacgaacacatcgaa
cagatgcggctttccgccaccaaggcgctgctggagcggcgcgatgtggtggtggtggcc
tcggtctcggcgatctacggcctgggcgatccggatctgtacctgaagatgatgctgcac
ctgaccaagggcatgatcatcgatcagcgctccattttgcgccggctggcggagctgcaa
tacagccgcaacgatcaggcgttccagcgcgccaccttccgcgtgcgcggcgaggtgatc
gacatcttcccggcggagtcggacgagctggcgctgcgggtcgagctgttcgacgaagaa
gtggagcggctgtcgctgttcgatccgctgaccgggcagatcgagcaggtggtgccgcgc
tttaccatttaccccaagtcgcactacgtgaccccgcgcgagcggatcattcaggcgatg
gaagagatcaaggtcgatctggccgaccgccgcaaagtgctgctggccaacaacaagctg
ctggaagaacagcgtctgacgcagcgcacccagttcgatctggagatgatgaacgagctg
ggttactgctcgggcattgaaaactattcgcgctacctgtccgggcgcggcgagggcgag
ccgccgccgaccctgttcgattacctgccggcggacggcctgctggtggtcgacgaatcc
cacgtcaccatcccgcagatcggcggcatgttcaaaggcgaccgatcgcgcaaggaaacg
ctggtggaatatggctttcgcctgccctcggcgctcgacaaccgcccgctgcgcttcgaa
gagttcgaggcgctggcgccgcagaccatttacgtgtccgccacgccgggcaaatacgag
ctggagaaatccggcggcgatcttgtcgatcaggtggtgcggcctaccgggctgctggat
ccggtagtggaagtgcggccggttaccacccaggtggacgatctgctgtcggagatccgc
aagcgggtggctatcaacgagcgcgtgctggtgaccaccctgaccaaacgcatggcggaa
gacctgaccgaatatctggaagaacacggcgagcgcgtgcgctacctgcactccgacatc
gataccgtggaacgggtcgaaatcattcgcgatttgcgcctgggcgagtttgacgtgctg
gtgggcatcaacctgttgcgtgaggggctcgacatgcccgaagtgtcgctggtggcgatt
ttggacgcggacaaggaaggcttcctgcgctccgagcgttcgctgatccagaccatcggc
cgcgcggcgcgcaacctgaacggcaaggcgatcctgtacggcgatcgcatcaccgattcg
atggccaaagccatcggcgaaaccgagcgccgccgggccaagcagcaggcgtacaatgaa
gaaaacggcatcgtgccgcaggggctgaacaagaaaatcggcgatatcctgcagctgggc
cagccgggcaatcgcagcaggaacaagggcaagggcaaggccgccgagagcgccgcgcag
taccagaacctgacgccgaaggcgctggatcagaagatccgcgagctggaggggcaaatg
tacacccatgcgcaaaacctggagttcgaacaggccgcggcgctgcgcgacgaaatccat
cagctgcgcgagcagtttatcgccatttcgtaa
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