Serratia ficaria: SAMEA4384070_1931
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Entry
SAMEA4384070_1931 CDS
T06444
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfj
Serratia ficaria
Pathway
sfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384070_1931 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfj03019
]
SAMEA4384070_1931 (rne)
03009 Ribosome biogenesis [BR:
sfj03009
]
SAMEA4384070_1931 (rne)
Enzymes [BR:
sfj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAMEA4384070_1931 (rne)
Messenger RNA biogenesis [BR:
sfj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4384070_1931 (rne)
Ribosome biogenesis [BR:
sfj03009
]
Prokaryotic type
rRNA processing factors
SAMEA4384070_1931 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
SNV99385
UniProt:
A0A240BUL6
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All DBs
Position
1:complement(2048816..2052217)
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AA seq
1133 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAVIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PSEEPAVAQPAAAAKPAAVVAAKPGLFGRLFGGLKALFAAEEQPAVVEAKPVEAPKAEST
GENRRQDRRGQRRQGTGRKERGERGERSERNDRPERGERKERGEGRGERDNRENREPRDN
REGRENRESREEQRRNRRNQQQNAPVVEEAVSEEAAKAQREEQQQRREQRAERQRRRQEE
KRQAQQEVKALESVEAVVESDEEQEERQQNMQRRQRRPLTQKVRVLSAEAEEELHRAAEE
LLAPKAPIAKIEDVQPASAEDGVKLLPETVAAPSEDDAQGERANGENGMPRRSRRSPRHL
RVSGQRRRRYRDERYPLQSPMPLAGAFASPEMASGKVWVSYPVTQTAQAEEVEVQAAASE
IAADNVMAPEAAAVAVAAPVIAAVAEPAKVEAEETQAAAEAVEPAVDSQPVAAAAETAVE
AETVSVVEETEETAVDPEAEAVEPAVAEETPVAVAAEEPAVEPAPAVVEAEPAVEAAPAA
AAEAETVAEETAEVVATVAEEAPQQEVAAPEVVETAPVIQQPTPVKTVQNALYKHIATAP
MTKAPAPAYVPEERKHSDWQRPSFNFEGKGSAGGHAAVNQATAPATKPQPVNE
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctcgtagat
ggacagcggctgtatgatttggatattgaaagtccgggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcacccgcattgaaccaagtcttgaagcagcgttcgtggactac
ggcgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatacttcccaagt
aactattcttcccatggccgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtc
atcgttcaggtagacaaagaagaacgtggcaacaaaggcgccgccttgaccaccttcatc
agcctggccggcagttacctggtgctgatgccgaacaacccgcgcgccggcggcatttcc
cgccgcatcgagggtgacgaccgcaccgaactgaaagaggcgctttcctctctgcaactg
ccggacggcatgggcctgatcgttcgcaccgcgggcgtcggtaaatccgccgatgcgctg
cagtgggatctgtccttccgcctgaagcactgggaagcgatcaagaaggccgccgaaggc
cgccctgctccgttcctgatccaccaggaaagcaacgtcatcgtgcgcgcattccgcgat
tacctgcgcccggacatcggcgaaatcctgatcgacaacccgaaggttctcgatctggcc
aaagagcacatcgctgcgctgggccgcccggatttcagcagcaaaatcaaattgtacagc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcaaatcgaatccgccttccag
cgtgaagtgcgtctgccttccggcggttcgattgtcatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaacggcgttc
aacaccaacctggaagcggcggacgagatcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgttatcgactttatcgacatgaccccggtgcgccaccagcgtgaagttgaa
aaccgcctgcgcgacgccgtgcgtcaggaccgcgcgcgcatccagatcggccgcatttcc
cgcttcggcctgctcgagatgtcgcgtcagcgcctcagcccgtcgctcggcgaatccagc
catcacgtctgcccgcgctgtaacggcaccggcaccattcgtgataacgaatcgctggcg
ttgtccattctgcgtctgattgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gccatcgtgccggttcaggttgcttcttacctgctgaacgaaaagcgcgaatcggttagc
gcgatcgaaaaacgccagggtggcgtgaaagcggtcatcgtgccgaacgatcaaatgcaa
accccgcactactcggtgctgcgcgtgcgcaagggcgaagaaaccccaacgctcagctac
ctgctgccgaagctgcatgaagaagagatggctcagccgctggaagatgcgccgatggag
cgcaagcgcccggaacagccagccttggcgtccttctctctggccgctgacgcaccgccg
ccgtccgaagagccggccgttgcccaacccgccgccgccgccaaacctgcagccgtggtc
gccgccaagccgggcctgttcggccgtctgttcggcggtctgaaagcgctgtttgccgcc
gaagaacaacctgccgtcgtcgaagccaaaccggttgaagcgccgaaggcggaaagcacc
ggcgaaaaccgtcgccaggatcgtcgcggccagcgccgtcagggtaccggccgtaaagaa
cgcggcgagcgcggtgagcgtagcgaacgcaacgatcgtccggaacgcggcgagcgcaaa
gagcgcggtgaaggccgcggcgaacgcgacaaccgtgaaaatcgcgagccgcgcgacaac
cgcgaaggccgcgaaaaccgcgagtctcgcgaagagcagcgccgcaaccgccgcaaccag
caacaaaatgcgccggttgtcgaagaggccgtgtcggaagaagccgctaaagcgcagcgt
gaagaacagcagcagcgccgtgagcaacgcgcggaacgtcagcgccgccgccaggaagag
aagcgtcaggctcagcaggaagtgaaagcgctggaaagcgttgaggctgtagttgaaagc
gatgaggagcaggaagagcgtcagcagaacatgcagcgtcgccagcgccgccctctgacg
cagaaagtccgcgtgctgtccgccgaagccgaagaagaactgcatcgcgcagcggaagaa
ctgctggcgccaaaagcgccgatcgccaaaatcgaagacgttcagccggcaagcgccgaa
gacggcgtgaaactgctgccggaaaccgtagccgctccgtccgaagacgatgcgcagggc
gaacgcgctaatggcgaaaacggcatgccgcgccgctcacggcgctcaccgcgccacctg
cgcgtcagcggtcagcgccgtcgccgctatcgtgatgagcgttatccgctgcagtcgcca
atgccgctggccggggctttcgcctcgccggaaatggcatcgggcaaagtgtgggtaagc
tacccggtcacgcaaactgcacaggccgaagaagttgaagttcaggccgcagccagcgaa
atcgccgccgacaacgtgatggcgccggaagccgccgccgttgccgttgccgcgccggtt
atcgctgccgtagccgagccagcgaaggtcgaagcggaagaaacccaggctgcggcggaa
gccgtcgagccggcggtcgacagccagccggttgcagccgctgcagaaaccgccgtcgaa
gctgaaaccgtatccgtagtggaagaaacagaagaaactgcggtagaccctgaagcggaa
gccgttgagccggcggttgcagaagaaacgccggtcgccgtcgcggcggaagaaccggcc
gtagagcctgcgccggcggttgtcgaagccgagccggcggttgaagcggcacctgccgcc
gctgctgaagctgaaaccgttgctgaagaaactgcggaagtggttgcaacggtggcggaa
gaagcgccacagcaggaagtggcggccccggaggttgtcgaaactgcgccggtcattcag
cagccaacgccggtgaaaaccgtgcagaacgcgctgtataagcatatcgccacggcgccg
atgaccaaggccccggcgccagcctatgtgcccgaagaacgcaagcacagcgactggcag
cgcccttccttcaacttcgaaggtaaaggttccgccggcggtcacgccgcggtgaaccag
gcgacggcgccggccaccaaaccgcagccggttaacgaataa
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