Serratia ficaria: SAMEA4384070_1946
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Entry
SAMEA4384070_1946 CDS
T06444
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
sfj
Serratia ficaria
Pathway
sfj03030
DNA replication
sfj03430
Mismatch repair
sfj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384070_1946 (holB)
03430 Mismatch repair
SAMEA4384070_1946 (holB)
03440 Homologous recombination
SAMEA4384070_1946 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfj03032
]
SAMEA4384070_1946 (holB)
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_1946 (holB)
Enzymes [BR:
sfj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4384070_1946 (holB)
DNA replication proteins [BR:
sfj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4384070_1946 (holB)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4384070_1946 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
SNV99485
UniProt:
A0A240BUW0
LinkDB
All DBs
Position
1:2063345..2064352
Genome browser
AA seq
335 aa
AA seq
DB search
MNWYPWLNAPYRQLVGQYATGRGHHALLLHAAAGNGDDALAYGLSRWLICQRRNGEKSCG
ECHSCRLMLAGNHPDYHVLAPEKGKSSLGIEPIRQVIEKLYSHAQQGGAKVIWLAQAEQL
TEAAANALLKTLEEPPEKTYFLLGCREPSRLLATLRSRCLYWHLASPDEQLGLQWLNRQT
PGNPVDHLTALRLHDGAPIAAERLLQPERWQQRNALCAALSAALPQHDMLSLLPVLNHEE
VAERLHWLCALLVDAMKWQQGAQGYALNQDQQPLVHQLASRLSSASLQQIVQQWLTCRHR
LLSVVGVNRELLLTEQLLGWEQMLGAAGPVQPHSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaactggtatccgtggttgaacgcgccttaccgccagttggtcggccagtacgccacc
ggccgcggtcaccatgcgctgttgctgcatgcggcggcgggcaacggcgacgatgcgctg
gcctatggcctgagccgctggctgatctgccagcggcgcaacggtgagaagagctgcggc
gaatgccacagctgccggctgatgctggcgggcaaccatccggattaccacgtgctggcg
ccggaaaaaggcaaaagcagcctggggattgagcctatccgccaggtaatcgaaaagctt
tattcccatgcgcagcagggcggcgccaaggtgatctggctggcgcaggcggagcaactg
accgaggcggcggccaatgcgctgctgaagacgctggaagagccgccggagaaaacctac
ttcctgttgggctgccgcgaaccctcgcgcctgctggcgacgctgcgcagccgctgtctg
tactggcatttggccagcccggacgagcagctgggcctgcaatggctgaaccgccaaacg
ccgggcaacccggtcgatcatcttaccgcgctgcgcctgcacgacggtgcgccgatcgcc
gccgaacgcttgctgcagccggaacgctggcagcagcgcaacgccctgtgcgccgcgctg
agcgccgcattgcctcagcatgacatgttgtcgctgctgccggtgttgaaccacgaggag
gtcgccgagcggctacactggttatgcgcattgctggtggacgccatgaagtggcagcag
ggcgcgcagggctacgcgctcaatcaggatcagcagccgctggtgcatcagttggccagc
cggctgagcagcgcctcgctgcagcaaatcgtgcagcagtggttgacctgccgccaccgg
ttgctcagcgtggtcggcgttaaccgcgagctgctgctgaccgaacaattactgggctgg
gagcagatgcttggcgctgccggccctgtccaaccccattcgctgtaa
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