Serratia ficaria: SAMEA4384070_2038
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Entry
SAMEA4384070_2038 CDS
T06444
Symbol
degA
Name
(GenBank) Degradation activator
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfj03000
]
SAMEA4384070_2038 (degA)
Transcription factors [BR:
sfj03000
]
Prokaryotic type
Helix-turn-helix
LacI family
SAMEA4384070_2038 (degA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
LacI
Peripla_BP_1
HTH_Tnp_ISL3
HTH_3
KaiA_N
HTH_38
Peripla_BP_6
IML1
HTH_26
Motif
Other DBs
NCBI-ProteinID:
SNV99918
UniProt:
A0A240BYH8
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All DBs
Position
1:2149782..2150792
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AA seq
336 aa
AA seq
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MASIKDVATRAGVSTATVSRVINNHPSVTVETRRAVHEAMDFLCYVPNRNAVQLSGKCSG
LIGVVVPNLINPHFCELLATLEEEARYVGKTILVKTHQNQPFQDRQRVRALAGMGIEALI
WVPTEVEASISGWLQATGINTAVVTQTSRFFNSVSNNQERGAETIAEHFIDTGRTRFGFI
GQDGVDNRKMSAYCKKVLSHGYRVDKRDSYWIPKGDGEHNRGHIHSLDNIIDNILACEDK
INCLFIYNDVAASYVIEHLRRRHIKIPQDIAVASFDNTIIAQMLNITSIAQPINEMGKLA
FELISSTEKKEHVDSIILTTRLIVRGSSLGMTMTNI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgatcaaagatgtagcaaccagagcgggggtttccaccgccaccgtatcccgg
gtaatcaataaccatcccagcgtcaccgtggaaacccgccgcgcagtacatgaggcaatg
gactttctctgctacgttcccaacaggaatgccgtccagcttagcggcaagtgttccggg
ctgatcggtgtggtggtacccaatctcatcaatccgcatttttgcgagctgttagctacc
ctcgaagaagaggcccgctatgtcggcaagacgattctggtcaagacccaccagaatcag
ccatttcaggatcggcaacgggtcagggcgttggccggcatggggatagaggctctgata
tgggtgcccaccgaggtggaagcgtcaatctccggctggctgcaggccactggcatcaat
accgccgtggtgacacaaacctcccgcttttttaattcggtttccaacaaccaggaacgc
ggagctgagacgatagctgagcattttatcgatactggtcgtactcgctttggctttatc
ggccaggatggcgtcgacaaccgtaagatgtcagcctactgtaaaaaagttctcagtcat
ggttatcgggtggacaaacgcgacagctactggatccctaaaggggatggtgaacataac
cgtgggcatattcattcgctcgataatattatcgataacattctggcctgtgaagataaa
ataaactgcctgtttatctataacgacgtggccgcaagttatgttatcgaacacctccgt
cgtcggcacattaagatcccccaggacattgccgtagccagcttcgataatacgattatc
gcgcagatgttgaatattaccagtatcgctcagcccattaacgaaatgggaaagctggct
ttcgagctaataagcagcacggaaaagaaagagcatgtcgactcaataatattaaccacc
aggcttattgttcggggaagcagtctggggatgacaatgacaaacatataa
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