Serratia ficaria: SAMEA4384070_2069
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Entry
SAMEA4384070_2069 CDS
T06444
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfj
Serratia ficaria
Pathway
sfj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4384070_2069 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_2069 (mfd)
Enzymes [BR:
sfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4384070_2069 (mfd)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4384070_2069 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
SNW00071
UniProt:
A0A240BW44
LinkDB
All DBs
Position
1:complement(2181828..2185301)
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AA seq
1157 aa
AA seq
DB search
MSTSDSRNRSSSPRYSLPERAGDLRQLGQLTGSACAVECAEIVERHNGPVMLIAPDMQNA
LRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMVRGVIILPVNT
LMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLY
PMGSEEPYRIDFFDDEIDSLRTFDVDTQRTLNEVDAINLLPAHEFPTDKNAIELFRSQWR
EQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGNLESAA
ERFWLDVNQRYENRRVDPMRPLLAPDTLWLRVDALFGELKAWPRMALKTEDLPTRAGNTN
LDYRTLPDLAVQAQNKAPLDHLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLGTSLI
QHLDQAQPAGRYMMVGAAERGFLDGMRNRALICESDLLGERVSRRRQDNRRTINTDTLIR
NLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISRY
AGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKTGFAFKHDREQYQL
FCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQV
AVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQQVLDDAVDGKVDIIIGTHK
LLQNDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQKLAEL
VPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFG
LAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSSQTEVELRMPALL
PDDFIPDVNTRLSFYKRIASAKRDGELEELKVELIDRFGLLPDPARNLLQSAALRQHAQT
LGIKRIEGNERGGFIEFGDKNRVDPGYLIGLLQSNPQVYRLDGPSKLKFMLDLTDRQKRL
KFVEDLLSAFREHTLAI
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgatagccgtaaccgttcctcatccccccgttattccctgcccgaacgc
gcgggcgacctgcgccagctcggccagttgaccggctcggcctgcgccgtggagtgcgcc
gagatagtcgaacgccataacgggccggtaatgctgattgccccggacatgcagaatgcc
ctgcggctgcgcgacgagatccagcagttcaccgaccagatggtgaccacgctgtcggac
tgggaaaccctgccgtacgacagcttctcgccgcatcaggaaatcatctccgcccggttg
tcgagcctgtatcacctgccgaccatggtgcgcggcgtgataatcctgccggtcaatacc
ctgatgcaacgcgtctgcccgcacgagttcctgcatggccacgcgctggtgatgaaaaag
ggccagcgcctgtcgcgcgacaaactgcgcgcccagctggaacaggccggctaccgcagc
gtcgatcaggtgatggagcacggcgagttcgccacccgcggcgcgctgctcgatctgtac
ccgatgggcagcgaagagccctaccgcatcgacttcttcgacgacgagatcgacagcctg
cgcaccttcgacgtcgacacccagcgtacgctgaacgaagtggacgccatcaacctgctg
ccggcccacgagttcccgaccgacaaaaacgccatcgagctgttccgcagccagtggcgc
gagcagttcgaggtgcggcgcgacgccgaacacatctaccagcaggtcagcaaaggcacc
tggccggccggcatcgaatactggcagccgctgttcttcagccagccgctgccgtcgctg
ttcagctacctgccggccaacaccctgatcgtcaacaccggcaatctggagagcgccgcc
gagcgtttctggctggacgtcaaccagcgttacgaaaaccgccgcgtcgatccgatgcgc
ccgctgctggcgccggacaccctgtggctgcgcgtcgatgcgctgttcggcgagctgaaa
gcctggccgcgcatggcgttgaaaaccgaagacctgccgaccagggccggcaacaccaat
ctggactaccgcactctgccggatctggcggtgcaggcgcagaacaaggcgccgctggac
cacctgcgccgttttatcgagggcttcgacggcagcgtgattttctcggtcgaaagcgag
ggccggcgcgaaacgctgcaggacctgctcggccgcatcaagctcggcacctcgctgatc
cagcatctggatcaggcgcagccggccggccgctacatgatggtcggcgctgccgagcgc
ggtttcctcgacggcatgcgcaaccgggcgttgatctgcgaaagcgatctgctgggcgag
cgcgtcagccgccgccggcaggacaaccgccgcaccatcaacaccgataccctgatccgc
aacctggcggagctgcatcccggccagccggtggtgcacctggagcacggcgtcgggcgc
tatgtcggcctgaccacgctggaagccggcggcatcaaggccgaatacctgatcctgtcc
tacgccggtgaagacaagctgtacgtgccggtgtcttcgctgcacctgatcagccgctac
gccggcggcgcggatgaaaacgccccgctgcacaagctgggcggcgacgcctggacccgc
gcgcggcaaaaagccgccgaacgggtgcgcgacgtggcggccgaattgctggacatctac
gcccagcgcgccgccaagaccggcttcgcctttaaacacgaccgcgaacagtatcagctg
ttctgccagaccttcccgttcgagaccacccccgatcaggagcaggcgatcaacgccgtg
ctgagcgacatgtgccaaccgctggccatggatcgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagtggcgatgcgcgccgccttcctggcggtggaaaacggcaagcaggtg
gcggtgctggtgccgaccaccctgctggcccagcagcacttcgacaacttccgcgatcgc
ttcgccacctggccggtgcgcatcgagatgatgtcgcgcttccgcagcgccaaagagcag
cagcaggtgctggacgacgcggtcgacggcaaggtcgacatcatcatcggcacccacaag
ctgctgcagaacgatctgcgctggaaagacctggggctgctgatcgtcgatgaagaacac
cgcttcggcgtgcgccacaaggaacgcatcaaggcgatgcgcgccgacgtggacatcctg
acgctgaccgccacgccgatcccgcgcacgctgaacatggcgatgagcggcatgcgcgat
ctgtcgattatcgccaccccgccggcgcgtcgtttggcggtgaagaccttcgtgcgcgaa
tacgacagcctggtggtgcgcgaagcgatcctgcgcgaggtgttgcgcggcgggcaggtc
tactacctgtacaacgacgtggaaaacatcgaaaaggcggcgcagaagctggcggagctg
gtgcccgaagcgcgcatcgccatcggccacggccagatgcgcgagcgcgatctggaacgg
gtgatgaacgacttccatcaccagcgtttcaacgtgctggtctgcaccaccattatcgaa
accggcatcgacattcccagcgccaacaccatcatcatcgaacgcgccgaccgcttcggg
ctggcgcagctgcaccagctgcgcggccgcgtcggccgttcgcaccatcaggcctacgcc
tatctgctgacgccgaatcccaaggccatgagcaccgacgcccacaagcggctggaggcc
atcgcttcgctggaagacctgggcgccggcttcgcgctggccacccatgacctggaaatc
cgcggcgccggcgaactgctgggggaagaccagagcggccagatgaccaccgtcggtttc
tcgctgtatatggagctgctggaaagcgcggtcgacgcgctgaaaaatggccgcgagcca
tcgctggaagatctcaccagcagccagaccgaagtggagctgcgcatgccggccctgctg
ccggacgacttcattccagacgtcaacactcggctgtcgttctataagcgcatcgccagc
gccaaacgcgacggcgagctggaagagctgaaggtggagctgattgaccgcttcggcctg
ctgccggatccggcgcgcaacctgctgcaaagcgcggcgctgcgccagcacgcgcagacg
ctgggcatcaagcgcatcgaaggcaacgaacgcggcgggtttatcgagttcggcgacaag
aaccgcgtcgatccgggctatctgatcggcctgctgcagagcaatccgcaggtttatcgc
ctggacgggccgagcaagctgaaattcatgctcgatctgaccgatcggcagaaacgcctg
aagtttgtcgaagatctgctgagcgccttccgcgagcataccctggcaatctga
DBGET
integrated database retrieval system
