Serratia ficaria: SAMEA4384070_2175
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Entry
SAMEA4384070_2175 CDS
T06444
Symbol
kdgR_1
Name
(GenBank) Pectin degradation repressor protein kdgR
KO
K19333
IclR family transcriptional regulator, KDG regulon repressor
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfj03000
]
SAMEA4384070_2175 (kdgR_1)
Transcription factors [BR:
sfj03000
]
Prokaryotic type
Helix-turn-helix
IclR family
SAMEA4384070_2175 (kdgR_1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
HTH_24
TrmB
HTH_5
HTH_11
MarR_2
Fe_dep_repress
MarR
HTH_45
FUR
Rrf2
Dimerisation2-like_dom
PadR
Mga
HTH_34
HTH_6
HTH_26
Motif
Other DBs
NCBI-ProteinID:
SNW00536
UniProt:
A0A240C057
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All DBs
Position
1:2292470..2293261
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AA seq
263 aa
AA seq
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MAITDTDKQPDSVSSVMKVFGILQALGDEREIGITELSQRVMMSKSTVYRFLQTMKSLGY
VSQEGESEKYALTLKLFELGAKSLQNVDLIRSADVQMRELSNHTRETIHLGALDEDSIVY
IHKIDSMYNLRMYSRIGRRNPLHSTAIGKVLLAWRDRAEVDEILSQVEFTRSTAHTLGSA
AELLPVLEQVRAQGFGEDVEEQEEGLRCIAVPVFDRFGVVTAGLSISFPTLRFSEDAKAD
YVKRLHTAARNISEQQGYHDYPF
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggctatcaccgatacagacaaacagccggattctgtttcatcagtaatgaaggtgttc
ggtatcctgcaggcgctcggcgacgagcgcgagattggcattaccgagctttcccagcgg
gtgatgatgtccaagagcaccgtctaccgttttctgcagaccatgaaatcgctgggctat
gtgtcgcaggaaggcgagtcggaaaagtatgcgctgacgctgaagctgtttgaactgggc
gccaagtcgctgcaaaacgtcgatctgatccgcagcgccgacgtccagatgcgcgagctg
tcaaaccatacccgcgaaaccattcacctcggggcgctggatgaagacagcatcgtctat
atccataaaatcgactcgatgtacaatttgcgcatgtattcgcgcatcggccgccgcaac
ccgctgcacagcaccgcgatcggcaaggtgctgctggcctggcgcgatcgcgcggaggtg
gacgagatcctgtcgcaggtcgagttcacccgcagcaccgcgcataccctgggcagcgcc
gccgaactgttgccggtgctggaacaggtgcgcgcgcagggctttggcgaggatgtggaa
gagcaggaggaagggctgcgctgcatcgcggtgccggtgttcgaccgctttggcgtggtg
accgccgggctgagcatctcgttcccgacgctgcgtttctccgaagacgccaaggccgat
tacgtgaagcggctgcataccgccgcgcgcaacatttccgagcagcagggttaccacgac
tacccgttctga
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