Serratia ficaria: SAMEA4384070_2634
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Entry
SAMEA4384070_2634 CDS
T06444
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfj03019
]
SAMEA4384070_2634
Enzymes [BR:
sfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SAMEA4384070_2634
Messenger RNA biogenesis [BR:
sfj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SAMEA4384070_2634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
PhoH
SLFN-g3_helicase
ResIII
AAA_16
ABC_tran
CCDC32
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
SNW02063
UniProt:
A0A240C413
LinkDB
All DBs
Position
1:complement(2782996..2786883)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLETVPAQLGELMLRDQQRLQRRLQGARKIKNPDALAAMAGELESDIAAARQKVQAR
AAACPKISYPANLPVSQKKQDILDAIRENQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIRTADNGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAYVNLWDYLKEQQKALSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSVPSDYRSVHTALLTGLLSHIGQKDADKQEFTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKRSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARQVNYGAIDPLLCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRR
RDILVDDETLFSFYDQRIPNDVVSGRHFDNWWKNAGRQQPDLLNFEKEMLIKDGANKISA
LDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPILNQVEEQGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSRDDWQWDQV
PDHLKMTFRVVGEKHQTLREGKDLAALRLQLKDKVQETLSAVADDGLEQSNLHIWSFGEL
PAFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSEREQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAEHGGPVWQEERFARLQEQIRAEL
NDTVVEVARQVEQILTAVFNINKRLKGRVDMSLALALSDVKTQLGGLVYRGFVTNNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVEQVQQAWQQWLNKLPPKRQQEEEVKEVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgagacagtgccggcccaactgggcgagctgatgctccgcgatcaa
caacgcctgcagcgccgcctgcagggcgcacgaaaaatcaaaaatcccgatgctctggcc
gcgatggccggcgagctggaaagtgacatcgcggcggcgcggcaaaaagtgcaggcgcgc
gccgccgcgtgcccgaaaatcagctacccggcaaacctgccggtcagccagaaaaaacag
gacatcctggacgccattcgcgaaaaccaggtggtgatcgtcgccggtgaaaccggctcg
ggcaaaaccacccagctgccgaagatttgcctggagctggggcgcggcgtgaaagggctg
atcggccacacccagccgcgccgtctggcggcgcgcaccgtggccaaccgcatcgccgac
gagctggaaaccccgctcggcggcagcgtcggctataaggtgcgctttaacgaccaggta
agcgacaacaccctggtcaagctgatgaccgacggcatcctgctggcggagatccagcag
gaccgcctgctgatgcagtacgacacgctgatcatcgacgaggcgcacgagcgcagcctg
aacatcgacttcatcctcggttatctgcgcgagctgctgccgaaacgcccggacctgaag
gtgatcatcacctcggccaccatcgatccgcagcgcttctcgcgccacttcaacaacgcg
ccgatcatcgaagtgtccggccgcacctacccggtagaggtgcgttatcggccggtggtc
gacgacgccgacgataccgaacgcgatcagctgcaggcgattttcgacgcggtggatgag
ctcgggcgcgaagggcccggcgatatcctgatctttatgagcggcgagcgcgaaattcgc
gataccgccgacgcgctgaaccgcttaaacctgccgcacaccgaggtgctgccgctgtac
gcgcgtttgtcgaacagcgagcagaaccgggtattccagtcgcaccacggccggcgtatc
gtgctggcgaccaacgtggcggaaacctcgctgacggtgccgggcatcaaatacgtgatt
gaccccggcaccgcgcgcatcagccgctacagcttccgcaccaaggtgcagcgcctgccg
atcgagccggtgtctcaggcctcggccaaccagcgcaagggccgctgcggccgcgtttcc
gagggcgtctgcatccgcctgtattcggagcaggacttcctgtcgcggcctgaatttacc
gatccggagatcctgcgcaccaacctggcgtcggtcatcttgcagatgacctcgctcggc
ctgggcgacatcgccgccttcccgttcgtggaggcgccggacaagcgcaacattcaggac
ggcgtgcggctgctggaagagctgggcgccatcaggaccgccgacaacggccattatcag
ctgacgccgcagggccgccagctggcgcagttgccgatcgaccctcggctggcgcgcatg
gtgctggaggcgcagaagagcggcagcgtacgcgaggtgatgatcatcaccgccgcgctg
tcgatccaggatccgcgcgaacggccgatggacaagcagcaggcgtcggacgaaaagcac
cgccgcttcgccgacaaggattcggactttctggcgtacgtcaacctgtgggactacctg
aaagagcagcagaaagcgctgtcctccagccagttccgccggctgtgccgcaacgatttc
ctcaactatctgcgggtgcgcgagtggcaggatatctacacccagctgcggcaggtggtg
aaggagctcggcctgccggtcaacagcgtgccttccgactaccgcagcgtgcacaccgcg
ttgctgaccggcctgctgtcgcatatcggccagaaagatgccgacaagcaggagtttacc
ggcgcgcgcaacgcccgcttctcgattttccccggctccgggctgttcaagaagccgcca
aaatggactatggtggccgagctggtggaaaccagccgcctgtgggggcgcattgccgcg
cgcatcgagcccgagtggatagaaccgctggcccagcacctggtgaagcgcagctacagc
gagccgcactggtcgaaatcgcagggcgcggtgatggccagcgagaaggtgacgctgttc
ggtctgccgatcgtcgccgcccgccaggtgaactacggcgcgatcgatccgctgctgtgc
cgcgaactgtttatccgccacgcgctggtggagggcgactggcagacgcgccacgcgttc
ttccgggaaaacctcaagctgcgcgccgaagtggaagagctggagcataagtcgcgccgt
cgcgacattctggtcgacgacgaaaccctgttcagcttctacgaccagcgcattccgaac
gacgtggtgtccggccgccatttcgacaactggtggaaaaacgccggcaggcagcagcct
gacctgctcaacttcgaaaaagagatgctgattaaggacggcgccaacaaaatcagcgcg
ctggactacccgaatttctggcatcagggcaatctcaagctgcggttgagctaccagttt
gaaccgggcgccgacgccgatggcgtgacggtgcacatcccgctgccgatcctcaatcag
gtggaggagcagggctttgaatggcaaattcccggcattcgtcgcgaactggtgattgcg
ctgatcaaatcgctgccgaagccggtgcgccgcaactttgtgccggcgccgaactacgcc
gaggcgttcctcggccgggttaccgcgctggaactgccgctgctggatgcgctggagcgc
gagctgcgccgcatgactggtgtgaccgtgtcacgtgatgactggcagtgggatcaggtg
cccgatcacctgaaaatgaccttccgggtggtgggcgaaaagcaccagaccctgcgcgaa
ggcaaggatttggcggcgctgcggctgcaattgaaggacaaagtgcaggagacgctgtcg
gcggtggcggacgacgggctggagcaaagcaacctgcatatctggagcttcggcgaactg
ccggcgttctacgagcagaaacgcggcggctactcgatgaaggcctacccggcgctggtg
gacgagaaagacagcgtggcgatccgcctgttcgacagcgagcgggagcagcaacaggcg
atgtggcaaggcacccgccgcctgctgttgctgaacatcccctcgccaatcaagtacctg
cacgagaagctgccgaacaaggccaagctggggctgtatttcaacccttacggcaaggtg
ttggatctgatcgacgactgcatatcctgcggcatcgacaaactgattgccgaacacggc
gggccggtatggcaggaagaacgcttcgcccggctgcaggaacagatacgcgccgaattg
aacgataccgtggtggaggtggccaggcaggtcgaacagatcctgacggcggtgttcaac
atcaacaagcggctgaaggggcgagtggacatgtcgctggcgctggcgctgtcggacgtg
aaaacccagctcggcgggctggtctatcgcggattcgtcaccaacaacggctggaaacgc
ctgccggataccctgcgttacctgcaggcgattgaacgccgattggagaaactggctatc
gatccgcaccgcgaccgcgcgcaaatgctgcgggtggagcaggtgcagcaggcttggcag
cagtggctgaacaagctgccgccgaagcgccagcaggaggaagaggtgaaagaggtgcgc
tggatgattgaagagctgcgcgtcagcctgttcgcccagcagctgggcaccccttatccg
atttcggacaagcgcatcctgcaaaccatcgagcagctttccgcctaa
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