Serratia ficaria: SAMEA4384070_2679
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Entry
SAMEA4384070_2679 CDS
T06444
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfj03016
]
SAMEA4384070_2679 (rnb)
Enzymes [BR:
sfj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAMEA4384070_2679 (rnb)
Transfer RNA biogenesis [BR:
sfj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAMEA4384070_2679 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
SNW02193
UniProt:
A0A240C4E9
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All DBs
Position
1:2831605..2833539
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
VATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIQCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTHFITDAEDHFAPWWVTLARHNLEKEAPEMVAI
GEPDAALAREDLTALDFVTIDSASTEDMDDALFVVDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIGADGALGNDIQF
FAAEIESKAKLVYDDVSNWLEGIAGWQPPSESIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLDIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEADAGKLLTLDGFCELRRHLDSQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIGQQPAEKPQDEITVQLAERRRLNRM
AERDVGDWLYARYLQDKAGTDRRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVLIKGEVAYRQSDALQVTIAEVRMETRSVIARPAV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtaaaagggactgagaaaggctttggctttcttgaggtcgacggt
caaaagagctatttcatcccaccgccgtacatgaagaaagtcatgcacggggaccgcgtg
gtcgccactctgcataccgagaaagaacgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcagaagcgcgatgaccgcctgtccatcgtg
cccgatcatccgttgctgaaagatgcgattcagtgccgcccggtgcgtgagctgacccac
aacttccaggccggcgactgggcggtcgccgaaatgcgccgccacccgctgaaaggcgat
cgcggcttcaacgccgatctgacccacttcatcaccgacgccgaagaccacttcgcgccc
tggtgggtgacgctggcacgccacaatctggaaaaagaagcgccggaaatggtcgccatc
ggcgaacctgacgccgcgctggcgcgtgaagatctgaccgcgctggattttgtcaccatc
gacagcgccagcaccgaagacatggacgatgcgctgttcgtggtcgacaacggcgacggc
tcgctgcagctgaccatcgccatcgccgacccgaccgcctacgttgagcagggcagcaag
ctggacgatatcgcccgcgtgcgcgctttcaccaactatctgccgggcttcaacatcccg
atgctgccgcgcgatctgtccgacaacctgtgctcgctgcgcccgaatgagcgccgccag
gtgctggcctgccgcgtgaccatcggcgccgacggcgcgctgggcaacgatatccagttc
ttcgccgccgaaatcgaatcgaaagccaagctggtttatgacgacgtctccaactggctg
gaaggcatcgccggctggcagccgccaagcgaatcgatcgcgcagcagatcaccctgctg
aaacgcgtgtgcgatgcgcgcaacgcctggcgccatcagcatgcgctggtgttcaaggat
cgccccgactaccgcttcgtgctgggcgaaaaaggcgacgtgctggacatcgtcaccgag
cagcgccgcagcgccaaccgcatcgtcgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgcgatcgcctgggcttcggcgtgtataacgtgcacaccggtttcgat
ccggcgctggtcgagcaggcggtcaccgtgctgcaggccaacggcgtggaggccgacgcc
gggaagctgctgaccctcgacggcttctgcgagctgcgccgccacctggattcgcagccg
acccagttcctcgacagccgcatccgccgcttccagaccttcgcggaaatcagcaccacg
ccggggccgcacttcggcctgggcctggaggcgtatgccacctggacttcgccgatccgc
aaatacggcgatatggtcaaccaccgcctgctgaaagccatcatcggccagcagccggcg
gaaaaaccgcaggacgagattacggtgcagctggcggaacgccgtcgcctgaaccgcatg
gcggaacgcgacgtcggcgactggctgtacgcccgctatctgcaggacaaggccggcacc
gatcggcgctttaacgcggagatcatcgacgtgacccgcggcggcctgcgcgtgcgcctg
ctggacaacggcgccgtcgccttcatcccggctccgttcatccacgcggtgcgcgacgaa
atgcagtgcagccaggaaaccggcaccgtgctgatcaagggcgaagtggcctaccgtcaa
agcgacgctctgcaggtcaccatcgccgaagtgcgcatggaaacccgcagcgtgattgcc
cgcccggcggtctga
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