Serratia ficaria: SAMEA4384070_2702
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Entry
SAMEA4384070_2702 CDS
T06444
Symbol
topA_1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfj03032
]
SAMEA4384070_2702 (topA_1)
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_2702 (topA_1)
Enzymes [BR:
sfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SAMEA4384070_2702 (topA_1)
DNA replication proteins [BR:
sfj03032
]
Prokaryotic type
DNA Topoisomerases
SAMEA4384070_2702 (topA_1)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAMEA4384070_2702 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
SNW02257
UniProt:
A0A240C2K5
LinkDB
All DBs
Position
1:complement(2857421..2860018)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSSEDKAKKKVK
KDEKTALVNRMGVDPYHGWKAHYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQQAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKGDTALQMEVTH
AHDKPFKPVNREQTHAAVKLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGDNFGAKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLSVKAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPFVEVGSELELQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDQVANNHAEWKAVLDEFFVDFSEQLGTAEKDPEEGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPEAEVLNILEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNENCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADAEGNKTMVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttaggcaatgactacgtggtgaagtccagcgtcggtcatatccgcgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcatccgaagacaaagccaagaagaaagttaaa
aaagatgagaagacggcgctggtcaatcgtatgggcgtcgatccttatcacggctggaaa
gcgcattacgaaatcctgccgggcaaagaaaaagttgtcgccgagttaaaatcgttagcg
gaaaacgccgaccatatttatctcgcaaccgaccttgaccgcgaaggggaagccatcgcc
tggcacctgcgggaagtgatcggcggggacgacaagcgttttagccgcgtggtgtttaac
gaaatcaccaaaaacgcgatccagcaggcgttcaaacagccgggcgagctgaacatcgac
cgcgtcaacgcacagcaggcgcgccgctttatggaccgcgtagtgggttacatggtctct
ccgctgctgtggaaaaaaatcgcccgtggcctgtccgccgggcgagtccagtcggtggcc
gtgcgtctggtggtggagcgcgaacgcgacatcaaggcgttcgtgccggaagaatactgg
gagctgcacgccgatctgctggcgaaaggcgataccgcgctgcagatggaagtgacgcac
gcccacgacaagccgttcaaaccggttaatcgcgagcagacccacgccgccgtcaagctg
ctggagaaagcccgctataccgtgctggatcgcgaagacaaaccgaccagcagcaagccg
ggcgcgccgttcattacctccacgctgcaacaggccgccagtacccgcctgagcttcggc
gtgaagaaaaccatgatgatggcccagcggctgtatgaagccggccacattacctacatg
cgtaccgactccaccaacctgagccaggatgcgctcaacatggtgcgtggctacatcggc
gacaacttcggcgccaagtacctgccgaaagcgccgaatcagtacagcagcaaggaaaac
tcgcaggaagcgcacgaagccattcgtccttcggatgtgaacgtgctcgccgagcaactg
aaagatatggaagcggacgcgcagaagctgtatcagctgatctggcgtcagttcgtcgcc
tgtcagatgacgccggcgcagtacgattccacaacgctgtcggtcaaggccggcgattac
cagctgcgcgccaagggccgcacgctgcgtttcgacggttggaccaaggtgatgcccgcg
ctgcgcaagggcgatgaagaccgcacgctgccgtttgttgaagtcggcagcgagctggaa
ctgcaaaagctgatcccaagccagcacttcaccaagccgccggcgcgttacagcgaagct
tcgctggtgaaagagttggaaaaacgcggcatcggccgcccgtcgacctacgcgtcgatc
atttccaccatccaggatcgtggctatgtgcgggtggaaagccgccgtttctacgccgag
aaaatgggtgaaatcgttaccgaccgcctggaggaaaacttccgcgagctgatgaattac
gatttcaccgcgcgcatggaagacggcctggatcaggtcgcgaacaaccacgccgagtgg
aaagcggtgctggacgagttcttcgtcgacttcagcgaacagctgggtacggcggaaaag
gatcccgaagagggcggcatgcgcccgaaccagatggtgatgaccagcatcgactgcccg
acctgcggtcgcaagatgggcattcgcaccgccagcaccggcgtgttcctcggctgttcc
ggctatgcgctgccgccgaaggagcgctgcaaaaccaccatcaacttggtgccggaagcg
gaagtgctcaacatcctcgaaggcgacgatgcggaaaccaacgcgttgcgcgcccgtcgc
cgctgccagaaatgcggcacggcgatggacagctacctgatagacaaccagcgcaagctg
cacgtctgcggcaacaacccggcgtgtgacggttacgagatcgaagagggcgagttccgc
ctgaaaggctatgacggcccggtggtcgagtgcgacaagtgcggttctgaaatgcacctg
aaaatggggcgtttcggcaagtacatgggctgcaccaacgaaaactgcaaaaacacccgc
aagatcctgcgtaacggcgacgttgcgccgccgaaggaggatccggtgccgttgccggag
ctgccgtgcgagaagtccgacgcgtactttgtgctgcgcgacggcgccgccggcgtattc
ctggcggccaacaccttccctaaatcgcgcgaaacccgcgcgccgctggtggaagagctg
gcccgcttcaaggatcgcttgccggagaagctgcgttatctggcggatgcgccggtggcg
gatgccgaaggcaataaaaccatggtgcgcttcagccgcaagaccaagcagcaatacgtc
tcttcggagaaggacggcaaggccaccggctggtccgctttctacgtggacggcaagtgg
gtcgaaggcaaaaagtaa
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