Serratia ficaria: SAMEA4384070_3304
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Entry
SAMEA4384070_3304 CDS
T06444
Symbol
ydfH_2
Name
(GenBank) Uncharacterized HTH-type transcriptional regulator ydfH
KO
K23466
GntR family transcriptional regulator, trigonelline degradation regulator
Organism
sfj
Serratia ficaria
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfj03000
]
SAMEA4384070_3304 (ydfH_2)
Transcription factors [BR:
sfj03000
]
Prokaryotic type
Helix-turn-helix
GntR family
SAMEA4384070_3304 (ydfH_2)
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Paralog
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GFIT
Motif
Pfam:
FCD
GntR
HTH_11
HTH_CodY
HTH_Crp_2
TrmB
MarR_2
Fe_dep_repress
HTH_24
HTH_10
MarR
HTH_IclR
GMT-wHTH
Rad21_Rec8
HTH_5
HTH_DeoR
Rrf2
Phage_rep_O
HTH_28
PFL-like
Motif
Other DBs
NCBI-ProteinID:
SNW03432
UniProt:
A0A240C788
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Position
1:3496714..3497391
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AA seq
225 aa
AA seq
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MVDNHSLKIENVPVTLRELALTKVRQAIIAGYFKAGDRLVERQLTEQLGVSRSVVREVIR
YLEAEGLIETLPKKGPIVAVLNWESAEQIYNIRMLLEQEAARDCAKLANDEDKKRLHTQL
LQIAQASREQDDIKRVEASQAFYETLFHVAKHTIAWEIVQRLNSRISRLRALTLASPERQ
VAGFERMSRIYDAIAGNDPAQAKQAVYDHLTEASQLAKQILSRPE
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggttgataaccattcgctaaaaattgagaacgtcccggtcaccctacgtgaactggcg
ctgaccaaagtacgtcaggcgattatcgccggttatttcaaggcgggcgatcgcctggtg
gaacgccagctcaccgagcagcttggcgtcagccgcagcgtcgtgcgggaagtgattcgc
taccttgaagcggaggggcttatcgagacgttaccgaaaaaagggccgatcgtcgccgta
ctgaactgggaaagcgccgaacagatctacaacatccgtatgctgctggagcaggaagcg
gcgcgggactgcgcgaagctggccaatgacgaggacaaaaagcgcctgcatacacagctg
ctgcaaattgcccaggcgtcacgtgagcaggacgacatcaagcgcgtggaagcgtcgcag
gcgttctatgaaacccttttccacgtcgccaaacacactatcgcctgggaaattgttcag
cgcctgaacagccgcatcagccgcttacgagcgttgacgctggcgtcgccagaacggcag
gtcgcagggtttgaacgcatgtcgcgcatctatgacgccattgccggcaacgacccggcg
caggccaagcaagcggtgtacgatcacctcaccgaagcttctcaactggcaaaacagatc
ctttccagaccggagtaa
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