Serratia ficaria: SAMEA4384070_3889
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Entry
SAMEA4384070_3889 CDS
T06444
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sfj
Serratia ficaria
Pathway
sfj03030
DNA replication
sfj03430
Mismatch repair
sfj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384070_3889 (dnaE)
03430 Mismatch repair
SAMEA4384070_3889 (dnaE)
03440 Homologous recombination
SAMEA4384070_3889 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfj03032
]
SAMEA4384070_3889 (dnaE)
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_3889 (dnaE)
Enzymes [BR:
sfj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4384070_3889 (dnaE)
DNA replication proteins [BR:
sfj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4384070_3889 (dnaE)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4384070_3889 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
SNW04501
UniProt:
A0A240C8V9
LinkDB
All DBs
Position
1:complement(4112928..4116416)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSDVLGDELAQLTVLATNNEGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEHREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYRQYFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKSGEPPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPLWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgtccacagtgactactccatgattgatgga
ttggccaagatcggacccttggtgaaaagagccgctgccttaggcatgcccgctttggcc
attaccgacttcaccaacctgtgcggcctggtcaagttctacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggacttccatgtgcaaagcgacgtgctgggcgacgag
ctggcgcagcttacggtgttggccaccaacaacgaaggctaccagaacctgacgctgctg
atttcccgcgcctaccagcgcggctacggcgccgccgggccgatcatcgatcgcgactgg
ctgatagaacaccgcgaagggttgctgctgctgtccggcgcgcgccacggcgacgtcggc
aagttcctgctgcgcggcaaccagccgcaggttgagcagtgcctggatttctaccggcag
tatttccccgacagttactatctggaactgatccgcaccggtcgcccggacgaggaaaac
tacctgcacgccgccgtggcgctggccaccgagcgcggtttaccggtggtggccaccaac
gacgtgcgttttctggtggaagacgacttcgacgcccatgagatccgcgtcgccatccac
gatggcttcacgctggacgatcccaagcgcccgcgcaactacagtccgcagcaatatatg
cgcagcgaagacgaaatgtgcgaactgttcgccgacattcccgaagcgctgctcaacagc
gtcgaaatcgccaaacgctgcaacgtgaccatccgcctgggtgaatacttcctgccgcaa
ttcccgaccggcgatatgaccaccgaagatttcctggtgctcaagtcgaaggaagggctg
gaggagcgcctcgagttcctgttccccgatcctgaagtgcgcgcccagcgccgcccggaa
tacgacgagcgtctggacattgagctgaaggtgatcaaccagatggggttccccggctac
ttcctgatcgtgatggagttcatccagtggtcgaaggacaacaacgtgccggtcggcccg
ggccgcggctccggcgccggttcgctggtggcctacgcgctgaaaatcaccgacctggat
ccgctggagtttgacctgctgttcgaacgcttcctgaacccggaacgcgtatccatgccc
gatttcgacgtcgacttttgcatggagaagcgcgatctggtgatcgagcacgtagcggag
atgtacggccgggaagcggtttcgcagatcatcaccttcggcaccatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctgggccacccttacggcttcgtcgatcgcatctcc
aagctggtgccgcccgatccgggcatgacgctggaaaaggcctttgccgccgaaccgcag
ctgccggaaatttacgaggccgacgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgcaacgccggcaaacacgccgggggcgtggtgatcgcaccgacc
aagataaccgactttgcgccgctgtactgcgacgccgaagggcatcatccggtcacccag
ttcgacaagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggtttgcgc
accctgaccatcatcgactgggcgctggagatgatcaacgcccgtcgcgccaagagcggc
gaaccgccgatcgacatcgccgccatcccgctcgatgacaagaaaagtttcgacatgctg
caacgctcggaaaccaccgcggtgttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgtctgaagcccgactgcttcgaagacatgatcgcactggtggcgctgttccgcccc
ggcccgctacagtccggcatggtggataacttcatcgaccgcaagcacgggcgcgaagag
atttcctacccggatatccaatggcagcacgaatcgctcaagccggtgctggaaccgacc
tacggcatcatcctgtatcaggaacaggtgatgcagatagcccaggtgctggccggctat
acgctgggcggcgcggacatgctgcgccgcgccatgggcaagaagaacccggtcgagatg
gccaagcagcgcggcggctttgaagacggcgcgaaatcgcgcggcatcgacggcgagctg
tcggtaaaaatcttcgacctggtggagaaattcgccggttacggcttcaacaaatcgcac
tccgccgcctatgcgctggtgtcgtaccagacgctgtggctgaaggcgcactacccggcc
gagtttatggcggcggtaatgaccgccgatatggacaacaccgacaaggtggtggggctg
gtggacgaatgctggcgcatggggctgaaaatcctgccgccggacatcaacagcgggcag
tatcacttccacgtcaacgacgaaggtgaaatcgtctacggcatcggcgccatcaagggc
gtgggcgaggggccgatcgaagccatcatcgaagcgcgcaacagcggcgaacagggctat
ttcaaagacctgttcgacctgtgcgcgcgttccgacatcaagaaactgaaccgccgcatt
ctggaaaagctgatcatgtccggggcgttcgaccgcctggggccgcaccgcgccgcgctg
atgaactcattgggcgacgcgctgaaggcggccgatcagcatgccaaagccgaagctatc
ggccaggtggatatgtttggcgtgctggcggaagcgccggagcaggtggagcaatcctac
gccaacgtgccgctgtggcaggagcaggtggtgctggacggcgagcgggagacgctgggg
ctgtacctcaccggccacccgatcacccagtacctgaaggaaatcgaacgctatgccggt
ggccagcgtttgaaagacatgcacccgacggaccggggcaagatgactaccgccgtcggg
ctggtggtcgccgcgcgggtgatggtgaccaagcgcggcaaccgcatcggcatttgtacg
ctggacgaccgttcgggccgtctggaggtgatgttattcaccgaggcgctagaaaaatac
cagcatttgttggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgtgaa
aaatacgctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgccagtcgttggaaccccatcgatcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtaacgccc
accgaccgcttgttgatagacttgcggacgttggtaggcaatgagcaggtggaactggaa
tttgactaa
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integrated database retrieval system
