Serratia ficaria: SAMEA4384070_3934
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Entry
SAMEA4384070_3934 CDS
T06444
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sfj
Serratia ficaria
Pathway
sfj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA4384070_3934 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_3934 (recD)
Enzymes [BR:
sfj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA4384070_3934 (recD)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA4384070_3934 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
PhoH
UvrD-helicase
SH3_13
SLFN-g3_helicase
nSTAND3
AAA_16
CbiA
UvrD_C
AAA_28
T2SSE
SRP54
TrwB_AAD_bind
ResIII
ATPase
AAA
NTPase_1
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
SNW04616
UniProt:
A0A240CBJ5
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All DBs
Position
1:complement(4163328..4165178)
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AA seq
616 aa
AA seq
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MIALLEQAVALGVLRPLDVQFARVVATEDQPDILLAAACLSAEAGAGHVCLMLEQLQADQ
LFEGRQPELAQAAWLAAGQPDTARWRQRLTESAAVGDGSGATPMVLQNQRLYLQRMWQNE
GEVVAFISGDSEHQAVEEAQLRAILDRLFGAAADEPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLGEGERLRIQLAAPTGKAAARLTESLGSASRKLALTPAQQALFPT
EAATLHRLLGAQANSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPKQARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSDARAAELTRLTGYRLQGRPAQAEAAVRDSLCLL
RRSYRFDANSGIGQLAQAVNTGDGERARAAIGGRFSDVAGYPLATTEEYQALLDMCVAGY
RDYLKRVVGGADAVEVLAAFGHFQVLCALREGPFGVAGLNERIEVGLQRAGLIQRPPAAL
GRWYPGRPVMIGRNDSALGLFNGDIGIALRDESGDLRVHFQLPDGSIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHFLPVLTRELVYTAITRARRQLSLYAADGVLMKAIRT
PTQRRSGLAERLQRAD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgctgctggagcaggcggtggcgctcggcgtactgcggccgctggatgtgcaa
ttcgcccgcgtggtggcgaccgaagaccaacccgatattctgctggccgccgcctgcctg
agcgccgaggcgggggccgggcatgtctgcctgatgctggagcagctgcaggcggaccag
ctgtttgaagggcggcagccggaactggcgcaggccgcctggctggcggccgggcaaccg
gacaccgcccgctggcggcagcgcctgacggaaagcgcggcggtgggcgacggcagcggc
gccacgccgatggtgctgcagaatcagcgtttgtatctgcagcgcatgtggcagaacgaa
ggcgaggtggtggcgtttatcagtggcgacagcgagcatcaggcggtggaggaagcgcag
ctgcgcgccattctcgaccggctgttcggcgccgcggccgatgagccggactggcagaaa
atcgccgccgcggtggccgcgacccggcgcattgcggtgatctccggcgggccgggcacc
ggcaagaccaccaccgtcgccaaactgctggcggcgctggtgcagcttggcgaaggcgaa
cggctgcgcattcagttggcggcgccgaccggcaaggcggcggcgcggttgaccgaatca
ctgggcagcgccagccgaaaactggcgttgacgccggcgcagcaggcgctgttcccgacg
gaggcggcgacgctgcaccggctgctgggcgcacaggcgaacagccagcgcatgcgctac
catcgcggcaatccgctgcatctggacgtgctggtggtggatgaggcctcgatggtcgat
ctgccgatgatggcgcgcctgatcgccgccttgccgaagcaggcgcgggtgattttcctc
ggcgaccgcgatcagctggcctcggtggaggccggtgcggtgctgggcgatatttgccgt
ttcgccgagcaagggtacagcgacgcacgcgcggcggagcttacccggttgaccggctat
cggttacaggggcggccggcgcaggcggaagcggcggtgcgcgacagcctgtgcctgctg
cgcaggagctatcgttttgacgccaattccggcatcggccagctggcgcaggcggttaac
accggcgatggcgagcgggcacgggcggcgatcggcgggcgtttcagcgacgtcgccggt
tatccgctggcgaccaccgaagaatatcaggcgctgctggatatgtgcgtggcgggctat
cgcgattacctgaagcgggtggtcgggggggccgatgccgtggaggtgctggcggcgttt
ggtcatttccaggtgctgtgcgcgctgcgcgaggggccgttcggcgtcgccgggctgaac
gaacgcatcgaggtcgggctgcagcgcgccgggttaatccagcgcccgccggcggcgtta
gggcgctggtatccggggcggccggtgatgatcgggcgcaacgacagcgcgctgggatta
ttcaacggcgatatcggcatcgccttgcgcgatgagagcggcgatctgcgcgtgcatttt
caattgcccgacggcagcatcaagtcggtgcagcccagccgcctgccggcgcatgaaaca
gcctatgcgatgacggtgcacaagtctcagggctcggagttcgatcatacggtgctggtg
ctgcccaatcatttcctgccggtattgacccgtgagctggtgtataccgcgatcacccgg
gcgcgcaggcagctttcgctgtacgccgccgatggggtgctgatgaaagcgatccgcacg
ccaacccagcggcgcagcgggttggccgagcgtttgcagcgcgccgactaa
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