Serratia ficaria: SAMEA4384070_3935
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Entry
SAMEA4384070_3935 CDS
T06444
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sfj
Serratia ficaria
Pathway
sfj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA4384070_3935 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_3935 (recB)
Enzymes [BR:
sfj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA4384070_3935 (recB)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA4384070_3935 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SNW04618
UniProt:
A0A240CC36
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All DBs
Position
1:complement(4165175..4168723)
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AA seq
1182 aa
AA seq
DB search
MTDTAPQRLDPQTLPLFGERLIEASAGTGKTFTIGALYLRLLLGLGREAAFPRPLTVEEI
LVVTFTEAATEELRGRIRANIHGLRIACVRGKSDNPLFTALMAEIDDRADAAAQLLAAER
QMDEAAIYTIHGFCQRMLTHNAFESGMLFEQTLVQDELPLRRQACADFWRRHCYPLPLGV
ARAVSQEWSGPEALLADLSGYLHGEAPTLRQPPKDGETVLMRHEQIVARIDAIKAQWRAA
GSLEALIGQSGVDKRSYSSKHLPNWLTKVGEWAAQETQDYQLPKELDKFRQSVLLEKTKK
GEPPRHPLFSAIDELFAEPLTLRDLIMARALSEIRTSIQQEKRQRAELGFDDLLSRLDSA
LQSGGGEQLAQAIRQRYPVAMIDEFQDTDPQQYRIFQKIYVGRPDCGLLLIGDPKQAIYA
FRGADIFTYMRARSDVNAHYTLDTNWRSSPMMIASVNQLFSQVDKPFLFDQIPFIEVSAA
EKNQGLAFELHNKPQPAMQFWLQQGEGVGVSDYQQMMARLCAAQIRDWLGAGQREQAWLN
DGKNRRPVQASDITVLVRSRNEAALVRDALSALSIPSVYLSNRDSVFDTPEAKDLLWLLQ
AVLAPEQERTLRSAMATGLMGLDAPTLDGLSRDERAWDALVVEFDQYRTQWLRRGVLPML
SEVMKRRQLAENLLASPGGERRLTDVLHLGELLQEAAAQLDSEHALVRWLAQQIAQPNRQ
SDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQALYHDRHSFQALLDLN
ANEESQAWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLIQGTRKKQGDTDLHRSALGYL
VQAGQAGDALYLHERLQRLAGDGVALAVVETPDEHPWQPNTAAAETLAAKHFTRQIQDFW
RVTSYTGLQQHGACLMQDLLPRLDIDAAGEQAEDSEPALTPHTFPRGAAPGTFLHSLFET
LDFTQPLDAEWLLAQLQQQGFADHWQPVLLAWMQVLLTTPLNDSGVTLSALTPQHKQAEL
QFYLPINRPLQAPALDALVKRHDPLSARCPALDFHKVQGMLKGFIDLVFCWQGKYYLLDY
KSNWLGEDSSAYTRPAMEQAMAEHRYDLQYQLYTLALHRYLRHRLPDYDYQRHFGGVIYL
FLRGVDAQHPGNGIFACRPEQSLVEGMDRLFSGETAASEEGS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacggccccgcagaggcttgatccgcagacgctgccgctgtttggcgagcgg
ctgatagaagcgtcggcggggaccggcaaaaccttcaccatcggcgcgctgtatctgcgc
ctgttattggggttggggcgggaggcggcattcccccggccgctgacggtcgaagagatc
ctggtggtgacctttaccgaggccgccaccgaggagctgcgcgggcgcatacgcgccaat
atccacgggctgcgcatcgcctgcgtgcgcggtaaaagcgataaccccttgtttaccgcg
ctgatggctgaaatcgacgatcgggccgacgccgccgcgcagctgctggcggccgaacgg
cagatggacgaagcggcgatttacaccattcacggcttctgccagcgtatgctgacccac
aacgccttcgaatccggcatgctgtttgagcaaacgctggtgcaggatgagttgccgctg
cgtcggcaggcctgcgcggacttctggcgccgccactgctacccgctgccgctgggcgtc
gcccgtgcggtcagtcaggagtggagcggcccggaagcgctgctggccgatctttccggc
tacctgcacggtgaggcgcccacgctgcgccagccgccgaaagacggcgaaacggtgctg
atgcgccacgaacaaatcgtggcgcgcatcgacgccatcaaggcgcaatggcgggcggcg
ggctccctggaggcgttgatcggccagtccggcgtcgacaagcgcagctacagcagcaag
cacctgccgaactggctgaccaaggtcggcgagtgggccgcacaggaaacccaggactac
cagctgccgaaggagctggataaattccgccagtcggtgctgctggaaaaaaccaaaaag
ggcgaaccgccgcgtcacccgctgttcagcgcgatcgatgaactgtttgccgagcccctg
acgctgcgtgacctgatcatggcgcgcgcgctcagtgaaattcgcacctccattcagcag
gaaaagcgccagcgcgccgagctgggctttgacgacctgctgagccggttggacagcgcc
ttgcagagcggcggcggcgagcaactggcgcaggcgatccgtcaacgttatccggtggcg
atgatcgacgaatttcaggataccgacccgcagcaatatcgcatcttccaaaagatttat
gtcggccggccggactgcggcctgctgctgatcggcgatccgaagcaggcgatatacgcc
ttccgcggcgccgacatcttcacctatatgcgcgcccgttccgatgtgaacgcccactac
acgcttgacaccaactggcgctcgtctccgatgatgatcgccagcgtcaaccagctgttt
tctcaggtggataagccgttcctgttcgaccaaattccctttatcgaagtcagtgcggcg
gaaaagaaccaagggctggcgtttgaactgcataacaagccgcagccggcgatgcagttt
tggctgcagcagggcgagggcgtgggggtaagtgattaccaacaaatgatggcgcgcctg
tgcgccgcgcaaatccgcgactggctcggcgccgggcagcgggaacaagcctggctgaac
gacggtaaaaaccggcgaccggtgcaggcctcggacatcacggtgctggtgcgcagccgc
aacgaggcggcgctggtgcgcgatgcgctcagcgcgctgtccattccgtctgtctatctc
tccaaccgcgacagcgttttcgacacgccggaagccaaggacctgctgtggctgttgcag
gcggtgctggcgccggagcaggagcgcacgctgcgcagcgccatggccaccggcctgatg
gggctggatgcgcctacgctggacggcctgagccgcgacgaacgggcctgggacgcgctg
gtggtcgagtttgaccaataccgtacccagtggctgcgccgcggcgtgttgccgatgctg
agcgaggtgatgaagcgccgccagctggcggagaacctgttggccagccccggcggcgaa
cggcgcctgaccgacgtgctgcatctgggcgagctgttgcaggaggccgccgcgcagctc
gacagcgaacacgcgctggtgcgctggctggcgcagcaaattgcccagcccaaccgccag
tccgataaccagcaactgcggctggaaagcgatcgccatctggtgcaggtgatcaccatc
cacaaatccaaaggcctggagttcgatctggtgtggctgccgttcgtcggcaatttccgc
cagcagcagcaggcgctgtatcacgatcgccacagcttccaggcgctgctggacctcaac
gccaacgaagagagccaggcctgggcggaagaagaacggctggcggaagatttgcgcttg
ctgtacgtggcgctgacccgctcggtgtaccactgcagcatcggcattgcgccgctgatc
cagggcacccgcaagaagcagggcgacaccgatctgcaccgcagcgcgctgggttatctg
gtgcaggccgggcaagccggcgatgcgctttatctgcatgagcgcctgcagcggctggct
ggcgacggcgtggcgctggcggtggtcgagacgccggatgaacacccctggcagccgaac
acggcagccgctgaaacgctggcggcaaaacatttcacccgtcaaatccaggatttctgg
cgggtgaccagctataccgggctgcagcagcacggcgcctgcctgatgcaggacctgctg
ccgcggctggatatcgatgccgcgggcgagcaggccgaagacagtgagccagcgctcaca
ccgcataccttcccgcgcggcgcggcgcccggcactttcctgcacagcctgtttgaaacc
ctggacttcacccagccgctggacgcagagtggctgttggcgcagctgcagcaacagggc
ttcgccgaccattggcagccggtgctgctggcgtggatgcaggtcttgctcaccacgccg
ctgaacgacagcggcgtgacgctgtctgcgctgacgccgcagcacaagcaggccgagctg
cagttttatctgccgatcaaccgaccgttgcaggcccccgcgctggatgcgctggtgaag
cgtcacgatccgctgtcggcccgttgtccggcgctggatttccacaaggtgcagggcatg
ctcaaaggttttatcgatttggtgttctgctggcagggcaaatactatctgctggattac
aaatccaactggctgggggaggacagcagcgcctacacccggccggcgatggagcaggcg
atggcggagcatcgctatgacctgcagtaccagctgtataccctggcgctgcaccgttat
ttgcgccaccggctgccggactacgattatcagcgccactttggcggggtgatttatctg
ttcctgcgcggggtggatgcacaacacccgggcaacggcatcttcgcctgccgcccggaa
cagtccctggtggaaggcatggatcggttgttcagcggcgagaccgccgcgtcggaggag
ggatcatga
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