Serratia ficaria: SAMEA4384070_4018
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Entry
SAMEA4384070_4018 CDS
T06444
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfj
Serratia ficaria
Pathway
sfj03410
Base excision repair
sfj03430
Mismatch repair
sfj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMEA4384070_4018 (recJ)
03430 Mismatch repair
SAMEA4384070_4018 (recJ)
03440 Homologous recombination
SAMEA4384070_4018 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_4018 (recJ)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SAMEA4384070_4018 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SAMEA4384070_4018 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4384070_4018 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
DUF2065
Motif
Other DBs
NCBI-ProteinID:
SNW04824
UniProt:
A0A240CA33
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All DBs
Position
1:complement(4260142..4261869)
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AA seq
575 aa
AA seq
DB search
MKTQLRRRPAADESHLPASLPPLLRRLYALRGVQGEQELERSVKGMLPWQQLDGIDDAVG
ILQQALADRRRIMVVGDFDADGATSTALTVLALRSMGGGDVDYLVPNRFEDGYGLSPEVV
EQAAARGAQLILTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGDTLPAAEAIVNPNLRGC
EFPSKSLAGVGVAFYLMLALRARLRDGGWFEQRALAMPNLAELLDLVALGTVADVVPLDA
NNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSV
GVALLLSDDIAQARMLANDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGLAMYH
PEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVAGLHMRDALERLDTLNPGL
MMKFGGHAMAAGLSLEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLTTA
ELLREGGPWGQAFPEPTFDGRFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTALW
PDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcaactacgccgccgaccggcggcggacgaaagccacctgccagccagcctg
cctccgctgctgcgccgtttatacgcgctgcgcggcgtgcagggcgaacaggaactggag
cgcagcgtcaagggcatgctgccctggcagcagctggacggcatcgacgacgccgtcggc
attctgcagcaggcgctggccgaccggcggcgcatcatggtggtgggcgacttcgacgcc
gacggcgccaccagcaccgcgctgacggtgctggcgctgcgcagcatgggcggcggcgac
gtcgattatctggtgccgaaccgcttcgaagacggctacggcctgagccccgaagtggtg
gaacaggcggcggcgcgcggcgcgcaactgatcctgaccgtcgataacggcatctcttcg
cacgccggggtcgacgtggcgcacgccaagggcatgcaggtgctggtgaccgatcaccac
ctgccgggcgacaccctgccggcggccgaggcgatcgtgaaccccaacctgcgcggctgt
gagttcccgtccaaatcgctggccggggtgggcgtcgccttttatctgatgctggcgctg
cgcgcccggctgcgcgacggcggttggttcgagcagcgcgccctggcgatgcccaatctg
gctgaactgctggatctggtggcgctgggtacggttgccgacgtggtgccgctggacgcc
aacaaccgcattctggtgtatcaggggctaaaccgcatccgcgccggcaaatgccggccg
ggcatccgcgcgctgctggaggtcgccaaccgcgacgcgcgccagctggcggccaacgat
ctcggctttgcgctcggcccgcggctcaacgccgccggacggctggacgacatgtcggtg
ggggtggcgctgctgctgagcgacgacatcgcgcaggcgcgcatgctggccaacgatctt
gacgcgttgaatcaaacgcggcgcgagattgagcagggcatgcaggtggaagcgctgcag
ctgtgcgaccagctggagcgcaccagcaccgaactgccttacggcctggcgatgtaccat
ccggaatggcatcagggcgtggtgggcattctggcttcgcgcatcaaagaacgttttcac
cgcccggtgatcgccttcgctccggcgggggacggcattttgaagggctccggccgttcg
gtggccggcctgcacatgcgcgacgcgctggagcggctggatacgctgaatcccggcctg
atgatgaaattcggcggccatgcgatggcggccgggctatcgctggaagaggccaaattc
gacgagtttcgccagcgcttcggcgagctggtgggcgagtggctcgatccggcgatgctg
gaaggggtaatttggtccgacggcgagctggcgatgcaggagctgtcgttgaccacggcg
gagctgctgcgcgagggcggcccctggggccaggcgttcccggagccgaccttcgacggc
aggttccgcatcctgcagcagcggctggtgggcgagaagcacctgaagctgatggtggag
ccgctcggcggcggcccgctgctcgacggcatcgccttcaacgtggacaccgcgctgtgg
ccggacagcagcgtgcgcgaggtggagctggcctacaagctcgacgtcaacgagttccgc
ggcaaccgcaacgtgcaattgctgatccagcatctttggccgcgctga
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