Serratia ficaria: SAMEA4384070_4090
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Entry
SAMEA4384070_4090 CDS
T06444
Symbol
fimD_5
Name
(GenBank) Outer membrane usher protein fimD precursor
KO
K07347
outer membrane usher protein
Organism
sfj
Serratia ficaria
Pathway
sfj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SAMEA4384070_4090 (fimD_5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sfj02000
]
SAMEA4384070_4090 (fimD_5)
02044 Secretion system [BR:
sfj02044
]
SAMEA4384070_4090 (fimD_5)
02035 Bacterial motility proteins [BR:
sfj02035
]
SAMEA4384070_4090 (fimD_5)
Transporters [BR:
sfj02000
]
Other transporters
Pores ion channels [TC:
1
]
SAMEA4384070_4090 (fimD_5)
Secretion system [BR:
sfj02044
]
Chaperone-usher system
Type 1 pilus assembly protein
SAMEA4384070_4090 (fimD_5)
Bacterial motility proteins [BR:
sfj02035
]
Pilus system
Fimbrial proteins
SAMEA4384070_4090 (fimD_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
SNW04935
UniProt:
A0A240CAH8
LinkDB
All DBs
Position
1:complement(4333132..4335603)
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AA seq
823 aa
AA seq
DB search
MARLAWQIAGLLMCGGVAQAEYRFSSSLLQVGNTPQSEVDLALFSDGDKQPPGEYRVDVF
LNEQRLDTRMLAFSLQPDAQGQERLQPCLKLEDLAGFDVDLAGFPTLQQTGECINLPQAI
PGARAELQFEQQQLRLSIPQAALKRQARGYVPPERWDSGIPAALSNYTLRGANDRSRQGG
GNESSYFVNLRNGANWGAWRLRHDGVWNRDNQGVAHWRTLNSYVQRDISALNGLLTLGDA
TTPGDIFDSLPLRGMQLASVEEMYPDSLRGYSPVVRGIAKSNAEVIIRQNGVVIDQRYLP
PGAFEISDLYAVSGSGDLDVTIKESDGAEQRLLVPFASLPVLQREGRLSYGLAAGQYRAQ
DASADDEKFMQGTLIYGLPFGTIYGGGQWADRYRSLALGVGQNLGRAGALSLDMTQSWAR
RREDNPQGDNRQGQMWRLRYEKSFPFTGTQLSMAGYRHASEGYTTLQQAMKTKGSADNHV
TRSRKELSLQQGLGPLPGSLFLSLTEDQRWGEQGKRRSVSLGYNGSAKGVSYGLNYSQNQ
NRGATTDRLVALNLSVPLNLWAHSTWVSYGISNGNNGQTTQTLGINGTALEGDNLNWGLN
GGYSNRGEGENGNLSLGYRGSKALLSVGLSQNGQHQRLNYDMQGGILLHAGGLTLSQPLN
DTVALVHAPAAGGVSVVNQVGVKTDGRGYAVVPYLSAYRQNQIALDPTTLADDVELELTG
QTVIPTRGAVVLADYRTKVGARLMMTLTRTDGRPVPFGAIAGLAGGDNSSIVGDGGQLFL
AGMPASGTLQVQWGKQPDQQCQVNYSLPETTGPDIPEMAAQCR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggttggcctggcagatcgccggcctgctgatgtgcggtggcgtggcgcaggcg
gaataccgcttcagctcgtcgttgctgcaggtaggcaatacgccgcaaagcgaagtggat
ctggcgttgttttccgacggcgacaaacagccgccgggggaataccgcgtcgatgtgttt
ctcaatgaacagcggctggatacccgcatgctggccttctcgttgcagccggatgctcag
ggccaggaacgtttgcagccttgtctgaagctggaagacctggccgggtttgatgtcgat
ctcgccgggtttcccacgctgcagcaaaccggcgagtgcatcaacctgccgcaggcgatc
cccggcgccagggcggaactgcagttcgagcagcagcaactcaggctgagcattccgcag
gcggcgttaaagcgccaggcccgcggctatgtgccgccggagcggtgggacagcggcatc
ccggcggcgttaagcaactataccctgcgcggtgcgaacgatcgcagccgccagggtggc
ggtaatgaaagcagctatttcgttaacctgcgcaacggcgccaactggggcgcctggcgg
ctacgccatgacggggtgtggaatcgcgataaccaaggcgtagcgcattggcgcacgctg
aacagctatgtgcaacgggatatcagcgcattgaacgggttgctgacgctgggcgacgcc
accacgccgggcgatatcttcgactccttgccgctgcgcggcatgcagctggcctcggtg
gaggagatgtacccggacagcctgcgcggctattcgccggtggtgcgcggcatcgccaaa
agcaatgccgaagtgatcatccgccagaacggcgtggtgatcgatcaacgttacctcccg
ccgggcgcgtttgaaatcagcgacctgtatgcggtttccggcagcggcgatctggacgtc
accatcaaggaaagcgacggcgcggaacagcgcctgctggtgccgttcgcctcgctgccg
gtgctgcagcgcgaagggcgcctgagctacggcctggccgccgggcaataccgtgcgcag
gacgcgagcgccgatgacgaaaagttcatgcagggcaccttaatttacggcctgccgttc
ggcaccatttacggcggcggccagtgggccgaccgctaccgttcgttggcgctgggcgtg
gggcaaaaccttggccgcgcgggggcgctgtcgttggatatgactcaaagctgggcccgg
cggcgcgaagacaacccccagggcgacaatcggcagggccaaatgtggcggctgcgctat
gagaaaagctttccgttcaccggcacccaactgagcatggccggttatcgccacgccagc
gaaggttataccacgctgcagcaggcgatgaagaccaaaggttctgccgacaatcacgtc
acccgcagccgcaaggagctttcgctgcagcagggtctggggccgctgcccggctcgctg
ttcctgagcctgacggaagatcaacgctggggtgagcagggcaaacgccgctcggtcagc
ctgggctacaacggcagcgccaaaggggtgagctatggcctcaactacagccagaaccag
aaccgcggggcaacaaccgataggttggtggcgctgaatctcagcgttccgctgaacctg
tgggcgcacagcacctgggtcagttacggcatcagcaacggcaacaacggacagaccacg
caaactctgggaataaacggcactgcgctggaaggcgacaacctgaactgggggctgaac
ggcggctacagcaaccggggcgaaggggaaaacggcaatctttcgctcggctatcgcggc
agcaaggcgctgctcagcgtcggtctcagccaaaacggccagcaccagcggctgaactac
gacatgcagggcggcatcctgctgcatgccggcgggttgacgctgtcgcagccgctgaac
gacacggtggcgctggtgcacgcgccggcggccggcggggtgagcgtggtcaaccaggtg
ggggtaaaaaccgacggccgcggctatgcggtggtgccttacctctccgcctatcggcag
aaccagattgcgctggacccgaccaccctggcggacgacgtggagctggagctgaccggc
cagacggtgatcccaacccggggtgcggtggtgctggcggactaccggaccaaggtgggc
gcgcggctgatgatgacgctgacgcgcaccgatgggcgcccggtaccgttcggcgctatt
gccggtctggcaggcggcgacaacagcagcattgtcggcgacggcggccagctgttcctg
gcgggcatgccggccagcggtacgctgcaggtgcagtggggtaaacagccggatcagcag
tgccaggttaactacagcctgccggaaacgaccggcccggatattccggaaatggcggcc
cagtgtcgttaa
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