Streptomyces formicae: KY5_3309c
Help
Entry
KY5_3309c CDS
T05416
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfk
Streptomyces formicae
Pathway
sfk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KY5_3309c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfk03400
]
KY5_3309c
Enzymes [BR:
sfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KY5_3309c
DNA repair and recombination proteins [BR:
sfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KY5_3309c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATL28327
UniProt:
A0A291QA05
LinkDB
All DBs
Position
complement(3897931..3901461)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDSALAEAVKAATDGHRAHVDLVGPPAARPFAVAALARESGRPVLAVTA
TGREAEDLAAALRTILPPDGVVEYPSWETLPHERLSPRSDTVGRRLAILRRLAHPSTDDP
ETGPVSVIVAPVRSVLQPQVKGLGDLEPVALRSGQTTDLNEVVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVREKAAALAEQHPELGELLGKIAEGIAVEGMESLAPALVDDMELLIDVMPEGSMAV
VCDPERVRTRATDLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADIREHARELGMM
WWSVSPFAADEELDQDTLKLGMHAPETYRGDTAKALADTKGWLADGWRVVYVTEAHGPAA
RTVEVLGGEGIAARHDADLADLAPSVVHVSCGSIDYGFVDQALKLAVLTETDLSGQKAAG
KDGQRMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTETESKA
TLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACDVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIKANAN
QVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggactccgcactcgccgaagcggtc
aaggccgcgaccgacggccaccgcgcccacgtcgacctggtgggaccgcccgccgcgcgc
cccttcgcggtggccgcgctcgcccgcgagtccggccgtcccgtgctcgccgtgacggcc
accggacgtgaggctgaggacctggcggcggcgctgcgcacgatcctgccgccggacggc
gtcgtcgagtacccctcctgggagacgctcccgcacgagcgcctctcgccccgctccgac
acggtgggccgccgcctcgcgatcctgcgccgcctggcgcacccgagcacggacgacccg
gagaccggaccggtctcggtgatcgtcgctcccgtgcgctccgtgctccagccgcaggtc
aagggcctgggcgacctggagcccgtggcactgcgcagcggccagaccacggatctgaac
gaggtcgtggaggcgctcgccgccgccgcgtactcccgggtcgaactggtcgagaagcgc
ggcgagttcgcggtccgcggcggcatcctcgacgtcttcccgcccaccgaggagcacccg
ctgcgcgtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggtctgtgggcgccgccctgccgcgagctgctg
ctcaccgacgacgtacgggagaaggccgcggccctcgccgagcagcacccggagctgggc
gagctgctcgggaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gccctggtggacgacatggagctgctgatcgacgtcatgcccgagggctccatggcggtg
gtctgcgacccggagcgggtgcgcacccgcgcgaccgacctggtggcgacgtcgcaggag
ttcctccaggccagctgggcggcgacggcgggcggcggcgaggcgccgatcgacgtgggc
gcggcctcgctgtggggcatcgcggacatccgcgagcacgcgcgcgagctcggcatgatg
tggtggtcggtctcgccgttcgccgccgatgaagagctggaccaggacaccctcaagctc
ggcatgcacgcccccgagacgtaccggggcgacaccgcgaaggcgctcgccgacaccaag
ggctggctcgcggacggctggcgcgtcgtgtacgtcaccgaggcgcacggacccgccgcg
cgcacggtcgaggtgctcggcggcgagggcatcgcggcccggcacgacgcggacctcgcc
gacctcgccccgtccgtggtgcacgtgtcctgcggctcgatcgactacggcttcgtggac
caggccctcaagctcgcggtcctcaccgagaccgacctgtcgggccagaaggcggcgggc
aaggacggccagcggatgcccgcgcggcgccgcaagaccatcgacccgctgaccctcgaa
tccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcacggtccagggcgcgacccgcgagtacctcgtcgtggagtacgcccccgccaagcgc
ggccagccgggcgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggccccgacgctgcaccggctcggcggcgccgactggaccaagaccaag
gcgcgggcgaagaaggcggtcaaggagatcgccgcggacctcatcaagctgtactccgcg
cgcatggcggccccggggcacgccttcggcgcggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtgggctacggcaag
acggagatcgcggtccgcgcggccttcaaggccgtgcaggacggcaagcaggtcgcggtc
ctggtgcccaccacgctcctggtccagcagcacttcggcacgttctccgagcgctactcc
cagttcccggtcaacgtgcgggcgttgagccgcttccagaccgagaccgagtcgaaggcg
accctggagggcctgcgcgacgggtccgtggacatcgtcatcggcacgcaccgcctgttc
tcctcggagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctcaagaagctccgcgccaacgtcgacgtcctgaccatg
tcggcgacccccattccccgtacgctcgaaatggcggtcaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcgccacccggtcctgaccttcgtcggcccgtacgag
gagaagcagatcggcgcggccatccgccgtgaactcctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtcgatcgaccgcgcggcggccaggctcagggacatcgtgccc
gaggcgcgcatcgccaccgcccacggccagatgtccgaacaggccctggaacaggtcgtg
gtggacttctgggagaagaagttcgacgtcctcgtctcgacgacgatcgtcgagtccggc
atcgacatctcgaacgccaacacgctgatcgtggagcgcggcgacaacttcggcctctcc
cagctccaccagctgcgcgggcgcgtcggccgtggccgcgagcgcggctacgcctacttc
ctctacccgccggagaagccgctcaccgagacggcccacgagcgcctcgccaccatcgcg
cagcacacggagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgagga
gcaggaaacctcctgggcggcgagcagtcgggacacatcgcgggcgtcggcttcgacctc
tacgtacgcatggtcggcgaggcggtggccgactaccgcgcgtccctggagggcggggtc
gaggaggagccgcccctggaggtcaagatcgagctcccggtcgacgcgcacgtcccccac
gactacgcgcccggcgagcggctgcgcctccaggcctaccgcgccatcgcctccgcgaac
acggaggaggacgtcaaggcggtccgcgaggaactcaccgaccgctacggcaagttgccc
gagccggtggagaacctgctgctcgtcgcgggcctgcggatgctggcccgcgcgtgcgac
gtcggcgagatcgtgctccagggcaacaacatccgcttcgcgcccgtggagctgcgggag
tcgcaggagctgcgcctgaagcgcctctaccccggcacggtcatcaaggcgaacgccaac
caggtcctcgtcccccgcccgaagaccgcgaaggtcggcggcaagccgctggtcgggcgc
gaactgctcggctgggtgggggagttcctcacctcgatcctcgggtcgtag
DBGET
integrated database retrieval system
