Streptomyces formicae: KY5_3880
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Entry
KY5_3880 CDS
T05416
Name
(GenBank) Helicase domain protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfk
Streptomyces formicae
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfk03019
]
KY5_3880
Enzymes [BR:
sfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KY5_3880
Messenger RNA biogenesis [BR:
sfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KY5_3880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
SLFN-g3_helicase
nSTAND_NTPase5
T2SSE
ResIII
NACHT
AAA_16
PhoH
AAA_25
NTPase_1
TsaE
Zeta_toxin
SRP54
Motif
Other DBs
NCBI-ProteinID:
ATL28898
UniProt:
A0A291QBF1
LinkDB
All DBs
Position
4598343..4602326
Genome browser
AA seq
1327 aa
AA seq
DB search
MSTQPALALDTLAPRLTELSLRDEHRIGRRLEGARRIRKPEARAAVLAEIAEDVAKAEAR
MAERGSRVPAVTYPEQLPVSQKKDDIAEAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEEMNTPLGEAVGWKVRFTDQVNQDGTFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDGEDADRDQITAITDAVEELQAEGKGDILVFLS
GEREIRDTADALNKKNYKFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVP
GIKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSEDDFE
ARPEFTDAEIFRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDPKKRLTQQGRKLSQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPSEKQ
TQADQQHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKAEYLNFLRIREWQDIY
TQLRTVAKQMGIHLNEDDAPEQHVHISLLSGLLSHIGMKDVKESKDSKDKDPKQRGGGRN
EYIGARNAKFAVFPGSALFKKPPRFIMSAELVETSRLWARVNARIEPEWVEPLAQHLLKR
TYSEPHWEKDQAAVMAIEKVTLYGVPIVTDRKVNYGRIDPEVSRDLFIRNALVEGDWRTH
HKFFAANRKLLTEVEELEHRARRRDILVDDETLFDFYDQRVPEDVVSGAHFDSWWKKKQR
EEPELLDFERSMLINEKAGDVSKDDYPDSWRQGQLKFKVTYQFEPGADADGVTVHIPLQV
LNQVTDDGFDWQIPGLREQVVIELIRSLPKPIRRHYVPAPNYATAFLERAVPLQEPLHVT
LARELQRMVGVPVAPDDFDLTRVPDHLKITFRITDERRRKLAEDKDLEALKLRLKPKARK
AISQAAAATAERTGGSSVERAGLTDWTIGTLSRVFETRRAGQPVKAYPALVDDGDTVSVR
LFDSEAEQLAAMWRGTRRLILRNIPVNPAKFASDKLTNQQKIALSANPHGSTQALFDDCA
MAAADKLIADFGGPVWDEESYRKLFDKVRAEIVDTTVRAVGQVQQVLAAWQAAERRLKST
KSPTLLANLSDVREQLNSLIKPGFVTETGIRRLGDLMRYMVAADRRLQQMPTNVQRDTSR
MEKVLEMRDEYLWLLEQMPQGRPVPREVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVK
AIDALAP
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcagcctgccctcgccctggacaccctcgccccccgcctgaccgagctctcg
ctgcgcgacgagcaccggatcggccggcggctggagggtgcgcgccggatccgtaagccc
gaggcccgtgccgcggtcctcgccgagatcgccgaggacgtggcgaaggccgaggcgcgg
atggccgagcgcggctcccgcgtgcccgcggtcacgtaccccgagcagctgccggtcagc
cagaagaaggacgacatcgccgaggcgatccgcgaccaccaggtcgtgatcgtcgcgggc
gagacgggctcgggcaagaccacgcagatccccaagatctgtctggagctcggccggggc
gtgcgcggcatgatcggccacacccagccgcgccgcatcgccgcccgtacggtggccgag
cgcgtggccgaggagatgaacacgccgctgggcgaggccgtcggctggaaggtccgcttc
accgaccaggtcaaccaggacggcacgttcatcaagctgatgacggacggcatcctgctc
gccgagatccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcc
cacgagcgctcgctcaacatcgacttcctgctcggttacctggcccagctgctgcccagg
cgcccggacctgaaggtcgtcatcacctcggcgaccatcgaccccgagcggttctcgcgg
cacttcggggacgcgccgatcgtcgaggtcagcggccgtacgtatccggtggaggtccgc
taccgcccgctcctcgaagaggacggcgaggatgcggaccgcgaccagatcaccgcgatc
acggacgccgtcgaggagctccaggccgagggcaagggcgacatcctcgtcttcctctcc
ggagagcgcgagatccgcgacacggcggacgcgctgaacaagaagaactacaagttcacc
gaggtcctgccgctgtacgcgcggctctcgcacgccgagcagcaccgcgtcttccagcag
cacacgggcagacgcatcgtcctcgcgacgaacgtcgcggagacctccctgaccgtcccc
ggcatcaagtacgtgatcgacccgggcacggcccgcatctcccgctacagccaccgcacc
aaggtgcagcgcctgcccatcgaggcgatcagccaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtcggacggcatctgcatccgtctgtacagcgaggacgacttcgag
gcgcgcccggagttcacggacgcggagatcttccgtacgaacctggcgtccgtcatcctc
cagatgaccgcggccgggctcggcgagatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctccaggaactgggcgcgctcgaccccgcc
cagaaggacccgaagaagcgcctcacccagcagggccgcaagctcagccagctcccggtc
gacccgcgcctggcccggatggtcctggaggccgacaagaacggctgcgtgcgcgaggtc
atggtgatcgccgccgcgctctccatccaggacccgcgcgagcgcccctccgagaagcag
acgcaggccgaccagcagcacgcccgcttcaaggacgagacgagcgacttcctcgccttc
ctgaacctgtggcggtacgtcagggagcagcagaaggagcgcggctcctcctccttccgc
cggatgtgcaaggcggagtacctgaacttcctgcgcatccgcgagtggcaggacatctat
acgcagctgcggacggtcgccaagcagatgggcatccatctgaacgaggacgacgccccc
gagcagcacgtccacatctcgctcctgtccggcctgctctcccacatcgggatgaaggac
gtgaaggagtcgaaggacagcaaggacaaggacccgaaacagcgcggcggcgggcggaac
gagtacatcggcgcccgcaacgccaagttcgcggtcttccccggctcggccctcttcaag
aagcctccgcgcttcatcatgtcggccgagctggtggagacctcgcgcctgtgggcccgg
gtgaacgcgcgcatcgagcccgagtgggtcgaaccgctcgcgcagcacctcctgaagcgc
acgtacagcgaaccgcactgggagaaggaccaggccgcggtgatggcgatcgagaaggtc
acgctctacggcgtcccgatcgtcaccgaccgcaaggtgaactacggccgcatcgacccc
gaggtctcccgcgacctgttcatccgcaacgcgctcgtcgagggcgactggcgcacgcac
cacaagttcttcgccgccaaccgcaagctcctcaccgaggtggaggagctggagcaccgc
gcccgccgccgcgacatcctcgtggacgacgagacgctcttcgacttctacgaccagcgg
gtgcccgaggacgtcgtctccggcgcgcacttcgactcctggtggaagaagaagcagcgc
gaggagcccgagctgctcgacttcgagcgctccatgctcatcaacgagaaggcgggggac
gtctccaaggacgactacccggactcgtggcggcaggggcagctcaagttcaaggtgacc
taccagttcgagccgggcgcggacgcggacggcgtcaccgtccacatcccgctccaggtc
ctcaaccaggtcaccgacgacggcttcgactggcagatccccggcctccgcgagcaggtc
gtgatcgagctgatccgctccctgcccaaaccgatccgccgccactacgtgcccgcgccg
aactacgcgacggcgttcctggagcgagccgtgcccctccaggagccgctgcacgtcacg
ctcgcgcgcgagctccagcggatggtcggtgtgccggtcgcgccggacgacttcgatctg
acgcgcgtacccgaccacttgaagatcaccttcaggatcaccgacgagcgccgcaggaag
ctcgccgaggacaaggacctggaggccctgaagctcaggctgaagccgaaggcccgcaag
gcgatctcgcaggcggccgcggcgacggcggagcgcacgggcggctcgtcggtcgagcgc
gcgggcctcacggactggacgatcggcacgctctcgcgcgtcttcgagacccgtcgtgcg
ggtcagccggtgaaggcgtacccggcgctcgtggacgacggcgacacggtctccgtgcgc
ctcttcgacagcgaggcggagcagctcgcggcgatgtggcgcggcacccgccggctcatc
ctgcgcaacatcccggtgaatccggccaagttcgcctcggacaagctgaccaaccagcag
aagatcgccctgtccgcgaacccgcacggctccacgcaggcgctcttcgacgactgcgcg
atggccgcggcggacaagctgatcgcggacttcggcgggcccgtctgggacgaggagtcc
taccgcaagctcttcgacaaggtgcgcgcggagatcgtcgacacgaccgtgcgcgcggtc
ggccaggtccagcaggtcctcgccgcctggcaggccgctgagcgccgcctgaagtcgacg
aagagcccgacgctgctcgcgaacctctcggacgtgcgggagcagctgaactccctcatc
aagccgggtttcgtgacggagacgggcatcaggcgcctcggggacctgatgcggtacatg
gtggcggcggaccggcggttgcagcagatgccgaccaacgtccagcgggacaccagccgc
atggagaaggtcctggagatgcgcgacgagtacctgtggctgctcgaacagatgccgcag
ggcaggcccgttccgcgggaggtcctggacatccgctggatgatcgaggagctccgcgtc
agctacttcgcgcacgcgctgggcacggcgtacccggtctcggacaagcggatcgtgaag
gcgatcgacgcgctggcgccgtga
DBGET
integrated database retrieval system
