Streptomyces formicae: KY5_4574
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Entry
KY5_4574 CDS
T05416
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfk
Streptomyces formicae
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfk03016
]
KY5_4574
Enzymes [BR:
sfk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KY5_4574
Transfer RNA biogenesis [BR:
sfk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KY5_4574
Prokaryotic type
tRNA splicing ligases
KY5_4574
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATL29592
UniProt:
A0A291QD94
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All DBs
Position
5368804..5369997
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPTSVEDAAMRQLQNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEAAIPVGRGMHEEPVGPG
GFHGMATAGWGEFWGRFEGVAEAVKFRHGRAMKQMGTLGSGNHHLEVSFDSEGAMWLTLH
SGSRNIGKELAEYHIGVAQKLAHNQGLVDRDLAVFVSETPQMAAYRNDLYWAQEYAKYNR
SIMMALLKDVVRKEFKKAKVTFEPEISCHHNYVAEERYEGMDLLVTRKGAIRAGTGDLGI
IPGSMGTATYIVKGLGNEKAFNSASHGAGRRMSRGAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPAAYKPIEQVMEHQRDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggttcccggcgcgaaggtgccgatccggatgtggaccgacccgacg
tcggtcgaggacgcggcgatgcgccagctccagaacgtcgcgacactgccgtggatcaag
ggcttggccgtcatgccggacgtccacttcggcaagggcgcgacggtcggctcggtgatc
gcgatgcggggtgccgtgtgtccggcggcagttggggtggacatcggctgcgggatgagc
gccgtcaagacgtcgctgaccgccaatgaccttccgggtgacctgtcgaggctgcgctcg
aagatcgaggcggcgattccagtggggcgggggatgcatgaggagcccgtggggccgggg
ggcttccatgggatggctacggcggggtggggggagttttgggggcggttcgagggggtt
gctgaggcggtcaagttccgtcatgggcgggccatgaagcagatgggaacgctcggaagc
ggaaatcaccatctagaggtctcgtttgattccgagggtgcgatgtggctgacgctccac
tccgggtctcgcaacatcggcaaggaactcgccgagtaccacatcggggtcgcgcagaag
ctggcgcacaaccaagggctcgtcgaccgtgacctcgcggtcttcgtgtcggagaccccg
cagatggctgcgtaccggaacgacctctactgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcgctcctcaaggacgtggtccgcaaggagttcaagaaggcgaaggtg
accttcgagccggagatcagctgccaccacaactacgtggcggaggagcggtacgaaggc
atggacctgctggtgactcggaagggtgccatccgggccggtacgggggatcttgggatc
atccccggctcgatgggcacggcgacgtacatcgtgaagggcctgggcaacgagaaggcg
ttcaactcggcttcccatggcgccggtcggcgcatgagccgtggcgcggccaagcgtcgc
ttctcgacgaaggacctggaggagcagacgcggggcgtcgagtgccgcaaggactccgga
gtcgtggacgagatcccggccgcctacaagccgatcgagcaggtgatggagcaccagcgc
gacctcgtggaggtcgtggcgaagctgaagcaggtcatctgtgtgaaggggtga
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