Streptomyces formicae: KY5_4787
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Entry
KY5_4787 CDS
T05416
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfk
Streptomyces formicae
Pathway
sfk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KY5_4787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfk03021
]
KY5_4787
03400 DNA repair and recombination proteins [BR:
sfk03400
]
KY5_4787
Enzymes [BR:
sfk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KY5_4787
Transcription machinery [BR:
sfk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KY5_4787
DNA repair and recombination proteins [BR:
sfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KY5_4787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ATL29805
UniProt:
A0A291QEE4
LinkDB
All DBs
Position
5586732..5590631
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGE
GRAFGSVAEAIMAFDAGELALQSTVDIRFPVGTIPPRGWVPPVAEEGEQEYQQGDSFRLR
TSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWAT
RSGVTVAISDVVVPEAKKAIVQGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLKIAVKG
EDGVLRKTENVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVANGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRIRIEETEKTKKIVVTPDDGSDETPFPISKRAKV
LVREGDHVEVGQKLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgacagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcccct
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgcttgatctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgttcgtggac
gaggagcgccgcacccgcgacctgccctccctggaggcgcacgtctccgtggagcgccag
cagatcgagaaccgtcgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgaaggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcc
ctcttcgacaacggtcgtcgtggtcgcccggtcaccggtcccggcaaccgcccgctgaag
tccctgagcgacatgctcaagggcaagcagggtcgtttccgtcagaaccttctcggtaag
cgcgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgtggtctgccgaaggccatggccctggagctcttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtcctggaagaggtcatcgcggagcacccggttctcctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgtccggtcacgatgccgacccaggac
atggtcctcggtctgttcttcctgaccaccgacggtgagctccgtgacaccaagggcgag
ggccgcgcgttcggctccgtcgccgaggcgatcatggcgttcgacgccggcgagctggcg
ctccagtcgacggtcgacatccgcttcccggtgggcaccatcccgccgcgtggctgggtg
ccgccggtcgccgaggagggcgagcaggagtaccagcagggcgacagcttccggctgcgt
acgtccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttcttctgggcgacc
cgttccggtgtcaccgtggccatctccgacgtcgtggtccccgaggccaagaaggcgatc
gtccagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagacgatcccgcgtccgatcaaggcgtcgttccgtgagggcctctcg
gtcctcgagtacttcatctccacgcacggtgcccgtaagggtctggcggacacggctctc
cgtaccgccgactccggttacctcacccgtcgtctggtcgacgtctcgcaggacgtcatc
attcgcgaggaggactgtggcaccgagcgcggtctgaagctgaagatcgcggtcaagggc
gaggacggtgtgctccgcaagacggagaacgtcgagacctcggtgtacgcccgcatgctg
gccgaggacgtcgtcatcgacggcaaggtcatcgcgccggccaacgtcgacctcggtgac
gtcctcatcgacgccctggtcgccaacggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgcccaagggtgtcgccccg
atctcggaggcggcaggccgcatccgcatcgaggagaccgagaagaccaagaagatcgtc
gtcacgccggacgacggcagcgacgagactcccttcccgatctcgaagcgcgccaaggtc
ctcgtgcgtgagggtgaccacgtcgaggtgggccagaagctcaccttcggtgccaccaac
ccgcacgacgtgctgcggatcctcggtcagcgcgcggtccaggtccacctggtcggcgaa
gtccagaaggtctacaacagccagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctctcccgctaccgcaacatccgggtcgagccgaccgaagag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
acgggctccggccaggccgttccgctggaggactacgactacgggccttacaaccagtag
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integrated database retrieval system
