Streptomyces formicae: KY5_5304
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Entry
KY5_5304 CDS
T05416
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sfk
Streptomyces formicae
Pathway
sfk03420
Nucleotide excision repair
sfk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KY5_5304
03430 Mismatch repair
KY5_5304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfk03400
]
KY5_5304
Enzymes [BR:
sfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KY5_5304
DNA repair and recombination proteins [BR:
sfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KY5_5304
MMR (mismatch excision repair)
Other MMR factors
KY5_5304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATL30322
UniProt:
A0A291QFE0
LinkDB
All DBs
Position
6133922..6137611
Genome browser
AA seq
1229 aa
AA seq
DB search
MSVATASLSDVPPRITDPEQLKELLGIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAA
RVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRQALVKAGVTDPEAVDPDNPPGEPVIS
TYHAFAGRLLTDHGLRIGLEPTSRLLADATRFQLAARVLREAPGPYPALTRSFPDLVSDL
LALDSELAEHLVRPERLRQYDTELLRALADAKLSNADLRKVPETAAARLELAELVGHYRA
AKRSRDLLDFGDQIALSATLARTRGEVGEILRDEFRVVLLDEYQDTSVAQRILLSGLFGG
GTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAYADGRPATRHALSENRRSGGSLLDL
ANGLAEPLRAMHAGVEALRPAPGAERDGVVRCALLRTHAEEIDWLADSIAHLVRTGKAPG
EIAVLCRTATDFGEIQGALVARDIPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLV
RLLTGPRWRVGARDLALLGRRARLLVRHGHAAPDDPDRRLAEAVEGVDPAEVISLADALD
TFLETPLTADDPSGGDDGLPFSADARVRFARLAAELRELRRSLSDPLMDVLHRVLAVTGL
EVELSASPHALAARRRETLSNFLDVAASFAANDQGASLLAFLGFLRTAAQYEKGLDNALP
GGENTVKVLTAHKSKGLEWDVVVVPGLVNGTFPSAQGREKWTAQAKVVPHELRGDAATLP
DIDAWDAKGMKAFHEAMKDHQRTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDF
LQALHDHCAAGHGEIEVWADEPEQDEENPALEEATADRAWPLPLDDASLARRRAAARTVL
DHLDRLTGESAPEHARSHEEAHPSAHDDVPPADDPEWPPPPPEDEEEGGGAEAGSYGEGG
HEDPGYPDDADPVDWDSLAKERPAVPHPADAPGAETARPGAPADGGHARVPLPATAPDAR
PHPAERVPDTRPAPDGPRARLTPEEARTLASWDRDLDALTGELLRAREAVRDVPVPPSLT
ASELMRLAADPEGFAQELARPMPRPPQPAARRGTRFHAWIESRFEALTLPMLAPEDLPGG
GPDEAEIADERDLEALKESFERTEYAHRTPYRVEVPFQFVIAGRVVRGRIDAVYKDGDGD
DTTYEIVDWKTSRTHSADPLQLAVYRLAWAEQQGVPLESVKAAFLYVRSGETARPRNLPG
RAELERLLLEEPDTAPDAEPREEPTPDGG
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtggccaccgctagcctctctgacgtgccacctcgcatcaccgaccccgagcag
ctcaaagagctcctcggcatcccgttcaccccggagcagacggcctgcatcaccgcgccg
cccgccccgcaggtgatcgttgccggagcggggtcgggcaagacgacggtgatggcggcc
cgcgtggtctggctggtcggcaccggacaggtcgcccccgagcaggtgctcggcctgacg
ttcacgaacaaggcggcgggcgagctcgccgagcgggtgcgccaggccctcgtcaaggcg
ggcgtcaccgaccccgaagcggtcgacccggacaaccctcccggcgagcccgtcatctcc
acgtaccacgccttcgcgggccgcctcctgaccgaccacggcctgcgcatcggcctggag
ccgacctcacgcctgctcgccgacgccacccgcttccagctcgccgcgcgcgtgctgcgc
gaggcgccaggaccctacccggcgctgacccggtccttccccgacctcgtcagcgacctc
ctcgccctcgacagcgagctcgccgagcacctcgtgcggcccgagcgcctccgccagtac
gacaccgaactgctgcgcgccctcgcggacgccaagctcagcaacgccgacctgcgcaag
gtcccggagacggcggccgcccgcctcgaactggccgagctggtgggccactaccgcgcc
gccaagcgctcccgcgacctcctcgacttcggcgaccagatcgccctgtccgcgacgctc
gcccgcacccgcggagaggtcggcgagatcctccgcgacgagttccgcgtcgtcctcctc
gacgaataccaggacacctcggtcgcccagcgcatcctcctgtccggcctgttcggcggc
ggcacgggccatccggtgaccgcggtcggcgacccctgccaggcgatctacggctggcgc
ggcgcctccgtggcgaacctggacgacttccccgagcacttcgcgtacgccgacgggcgc
cccgccacccgtcacgcgctcagcgagaaccgccgcagcggcggcagcctcctggacctg
gccaacggcctcgcggagccgctgcgcgccatgcacgcgggcgtggaggccctgcggccc
gcgcccggcgccgagcgcgacggcgtggtgcgctgcgccctcctgcgcacgcacgccgag
gagatcgactggctcgccgactcgatcgcccacctggtgcgcaccggcaaggcgcccggc
gagatcgcggtcctgtgccgcacggcgacggacttcggcgagatccagggcgccctcgtc
gcccgcgacatccccgtggaggtcgtcggcctctccggactcctgcacctgccggaggtc
gccgacctcgtcgccgtctgcgaggtcctccaggacccgggggccaacgcctccctggtg
cgcctgctgacaggaccccgctggcgcgtcggcgcccgcgacctcgccctcctggggcgc
cgcgcccgcctcctcgtacgacacgggcacgccgcccccgacgacccggaccggcgcctc
gccgaggccgtcgagggggtcgacccggccgaggtcatatcgctcgcggacgcgctggac
accttcctggagacaccgctcaccgcggacgacccctccggaggggacgacgggctgccg
ttctcggcggacgcgcgggtgcgcttcgcccggctcgccgccgaactgcgcgagctgcgc
cgctcgctgtccgaccccctgatggacgtgctgcaccgcgtgctggccgtgacgggcctg
gaagtggagctctccgcctcgccgcacgccctcgcggcccgccgccgcgagacgctctcc
aacttcctcgacgtcgccgcgtccttcgccgccaacgaccagggcgcctcgctgctcgcc
ttcctcggcttcctgcgcacggccgcccagtacgagaagggcctcgacaacgccctgccg
ggcggcgagaacacggtcaaggtgctcaccgcccacaagtccaagggcctcgagtgggac
gtcgtcgtggtccccggcctggtcaacggcaccttcccgagcgcacagggccgcgagaag
tggaccgcccaggccaaggtcgtgccgcacgagctgcgcggtgacgcggccacgctgccc
gacatcgacgcctgggacgccaagggcatgaaggcgttccacgaggcgatgaaggaccac
cagcgcaccgaggaactccgcctcggctacgtcacgttcacccgcccccgctcgctgctc
ctcggctcgggccactggtggggcccctcccagaagaagccgcgcggcccctcggacttc
ctccaggccctgcacgaccactgcgcggcgggccacggcgagatcgaggtctgggcggac
gaaccggagcaggacgaggagaacccggcgctggaggaggcgaccgccgaccgggcctgg
ccgctcccgctggacgacgcctcgctggcccgccgccgcgccgccgcgcggacggtcctc
gaccacctggaccgcctgacgggggagagcgcgcccgagcacgcccgctcccacgaggag
gcccacccgtcggcacacgacgacgtgcccccggccgacgaccccgagtggccaccgcca
cctccggaggacgaagaagagggcggaggggccgaagcgggctcctacggagagggtggt
cacgaagaccccggttaccccgacgacgccgacccggtggactgggactccctggcgaag
gagcgcccggccgtcccgcaccccgcggacgcccccggcgccgagaccgcccgccccggc
gcccccgccgacggcggccacgcacgcgtaccgctgcccgcaaccgcgcccgacgcccgc
ccacaccccgcggagcgcgtccctgacacccgccccgcgccggacgggccccgggcccgc
ctcaccccggaggaggcccgcaccctcgcctcctgggaccgcgacctggacgcgctcacc
ggcgagctgctgcgcgcccgcgaggccgtcagggacgtgcccgtgccgccctcgctcacc
gcgtccgagctgatgcgcctcgccgccgaccccgaagggttcgcgcaggagctggcccgc
cccatgccgcgcccgccgcagcccgcggcccgccggggcacccgcttccacgcctggatc
gagtcccgcttcgaagcgctgacgctgccgatgctcgccccggaggacctgccgggcggc
ggccccgacgaggccgagatcgccgacgagcgcgacctggaagccctcaaggagtccttc
gagcgcaccgagtacgcccaccgcacgccctaccgcgtcgaggtccccttccagttcgtg
atcgcgggccgcgtcgtcaggggccgcatcgacgccgtctacaaggacggtgacggggac
gacacgacgtacgagatcgtcgactggaagaccagccgcacccacagcgccgaccccctc
cagctcgcggtctaccggctggcctgggccgagcagcagggcgtgcccctggagtcggtg
aaggccgccttcctgtacgtgcgcagcggcgagaccgcgcggccccggaacctgccgggc
cgcgccgagctcgaacgcctgctcctcgaagaaccggacaccgctccggacgccgaaccg
cgggaagagccgaccccggatggcggatag
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