Streptomyces formicae: KY5_6199c
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Entry
KY5_6199c CDS
T05416
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sfk
Streptomyces formicae
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfk03016
]
KY5_6199c
Enzymes [BR:
sfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KY5_6199c
Transfer RNA biogenesis [BR:
sfk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KY5_6199c
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ATL31217
UniProt:
A0A291QI67
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All DBs
Position
complement(7210864..7212144)
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AA seq
426 aa
AA seq
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MTDAQETAADSSLRTTGGAPPADDGLAPEGLPIPLLEPRDGIPPVIADEESLAAVVAAFA
AGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPVACPDLSGLGEAIGDTEWVLH
AATQDLPCLREIGMIPSRIFDTELAGRLAGFPRVGLGAMVESVLGYVLEKGHSAVDWSTR
PLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWAREEFDAIAAAPPAPPRKDPWRRT
SGMHKVRRRRQMAVVRELWTARDKVAQRRDVSPGKVLSDGAIVEAALALPPNVHALAALT
GFGHRMGRRQLEQWQGAVDRAKALPDAELPQPGQTVSGPPPPRSWADRDPAAAARLAAAR
AAVSALAEELNMPQENLITPDTVRRICWEPPAQVDADSVASALAAHGARQWQISLVTPAL
VAALAT
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcagacagctcactgcgaaccaccggaggcgcccct
ccggccgacgacggcctcgctcctgaagggctgccgatccccctgctcgagccgcgcgac
ggcattccgccggtgatcgccgacgaggaatccctcgccgcggtggtcgccgcgttcgcc
gcgggcaccgggcccgtcgccgtcgacgccgagcgcgcgtccggataccggtacggccag
cgcgcctatctcgtccagctgcgccgcgagggcgcgggcagcgcgctcgtcgaccccgtc
gcctgccccgacctctccggtctcggcgaggccatcggggacaccgagtgggtgctgcac
gcggcgacccaggacctgccgtgcctgcgcgaaataggcatgattccgtcgcggatcttc
gacacggagctcgcgggccgactcgccggattcccgcgcgtgggactcggcgcgatggtc
gagagcgtcctcggctacgtactggagaaggggcactccgccgtcgactggtcgacgcgg
ccgctgcccgagccctggctgcggtacgcggcgctcgacgtcgagctgctcgtggacctg
cgcgacgccctggagaaggagctcgaccggcaggggaagctggagtgggcccgcgaggag
ttcgacgccatcgccgccgcgccgcccgcgccgccccgcaaggacccctggcgtcgtacg
tccggcatgcacaaggtgcggcggcgccgtcagatggcggtcgtgcgggagctgtggacc
gcgcgcgacaaggtcgcccagcggcgtgacgtgtcccccggcaaggtactcagcgacggc
gcgatcgtcgaggcggcgctcgccctgccgcccaacgtgcacgcgctcgccgcgctcacc
ggtttcgggcaccgcatggggcggcgccagctcgagcagtggcagggcgcggtcgaccgc
gccaaggcgttgccggacgcggagcttccgcagcccgggcagacggtgagcgggccgccg
ccgccccggtcctgggcggaccgggacccggcggccgcggcgcggctcgccgcggcgcgg
gcggcggtctcggcgctcgccgaggagctgaacatgccgcaggagaatctgatcactccg
gacacggtccggcgcatctgctgggagcctccggctcaggtggacgcggattccgtggcc
tccgcgctggccgcgcacggcgcccgccagtggcagatctcgctggtcaccccggccctg
gtcgcggccctcgccacctga
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