Streptomyces formicae: KY5_7403
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Entry
KY5_7403 CDS
T05416
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sfk
Streptomyces formicae
Pathway
sfk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KY5_7403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfk03400
]
KY5_7403
Enzymes [BR:
sfk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KY5_7403
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KY5_7403
DNA repair and recombination proteins [BR:
sfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KY5_7403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
Zn_ribbon_RRN7
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
ATL32421
UniProt:
A0A291QL44
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All DBs
Position
8689606..8690466
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AA seq
286 aa
AA seq
DB search
MPELPEVEALRAFLTDHLVGRQVVRVLPVAVSVLKTYDPPLTALEGRTVTGVARHGKFLD
VDAEGTHLVTHLARAGWLQWKDRLPDGAPRPGKGPLALRVALETGEGFDLTEAGTQKRLA
VYVTEDPRTVPGIARLGPDPLAADFDEERLAGLLAGERRQIKGALRDQSLIAGIGNAYSD
EILHAARMSPFKIASNLTKEEVHGLHVALLATLTEAVDRSRGVAAGRLKAEKKSGLRVHG
RTGEPCPVCGDTIREVSFADSSLQYCPTCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaagtggaggcgctgcgcgccttcctgacggaccatctggtcggt
cgccaggtcgtgcgcgtgctgcccgtcgcggtcagcgtcctcaagacgtacgacccgccg
ctcaccgccctggagggccgcacggtcaccggggtggcgcggcacggcaagttcctggac
gtcgacgccgaggggacgcacctcgtcacgcacctggcccgcgcgggctggctccaatgg
aaggaccgtctgccggacggcgccccgcgccccggcaagggcccgctggcgctgcgggtg
gccctggagaccggcgagggcttcgacctcacggaggcgggcacccagaagcgcctggcc
gtgtacgtcaccgaggacccccgcacggtcccggggatcgcccgcctcggccccgacccg
ctcgccgccgacttcgacgaggagcgcctggccgggctgctcgcgggtgaacggcggcag
atcaagggggcgttgcgcgaccagagcctgatcgcgggcatcggcaacgcctacagcgac
gagatcctgcacgcggcgcgcatgtcgccgttcaagatcgcgtcgaacctcacgaaggag
gaagtccatgggctgcatgtggcgctgctggctacgctgaccgaggcggtggaccgttcg
cgcggtgtcgcggcgggccgcctcaaggcggagaagaagagcggcctgcgcgtgcacggc
cgcaccggcgagccgtgccccgtgtgcggcgacacgatccgggaggtgtccttcgccgac
tcctcgttgcagtactgcccgacgtgccagacgggcggcaagccgctcgcggaccgcagg
atgtcacgactgctgaagtga
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