Shigella flexneri 301 (serotype 2a): SF0442
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Entry
SF0442 CDS
T00097
Symbol
ybbB
Name
(RefSeq) tRNA 2-selenouridine synthase
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfl03016
]
SF0442 (ybbB)
Enzymes [BR:
sfl01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
SF0442 (ybbB)
Transfer RNA biogenesis [BR:
sfl03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
SF0442 (ybbB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
T2SSE
AAA_16
AAA_18
AAA_23
DUF3333
AAA_22
Motif
Other DBs
NCBI-GeneID:
1023350
NCBI-ProteinID:
NP_706389
UniProt:
Q83SD5
A0AB36P9J2
LinkDB
All DBs
Position
complement(459863..460957)
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AA seq
364 aa
AA seq
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MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMDNDERASVGTCYKQQGS
DAALALGHKLVAGEIRQQRMYAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPL
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG
RTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
LAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYDPMYRYQLEKKAEKVVFRGEWAEVAVW
VKAQ
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagagacacacggaacaggactatcgtgccctgctgattgctgatacgcccatt
attgatgttcgcgcccctatcgagtttgagcaaggcgcaatgcccgccgctatcaatctg
ccgttaatggataacgatgaacgcgcctccgttggcacctgctataaacagcaaggctca
gacgcagcgctggcgctggggcataaactggtggcgggtgaaattcgtcagcagcgtatg
tacgcctggcgggcagcgtgcctgcaaaatccgcaaggtattctctgctgcgcccgtggc
ggtcaacgttcacatattgtgcaacgctggctgcatgaagcggggattgattatccgctg
gtggaaggcggttataaggcactgcgccagaccgcgattcaggcgaccattgaactggca
caaaaaccgatagtgctgattggcggttgtaccggcagcggtaaaacgctattagtgcaa
caacagccaaacggtgttgatctggaagggctggcgcgtcatcgcggttcggcgtttggt
cgcacgttacaaccacaacttagccaggcgagttttgaaaacctgctggctgccgaaatg
ctaaaaaccgacgcccgtcaggatttgcgcctgtgggtgctggaagatgaaagccggatg
atcggttcgaatcacctgccggaatgtctgcgcgagcgaatgactcaggcggcgattgcg
gtggtagaagatccgtttgagatccgtcttgaacgcctgaatgaagagtatttcttgcgt
atgcatcatgattttacccacgcttatggcgacgaacagggctggcaggaatattgcgaa
tacctgcatcacggactttcggcgattaagcgtcggctggggttacagcgctataacgaa
ctcgctgcccagctggatacggcgctgacaacgcaactcaccaccggcagcaccgacggt
catctggcctggctggtgccgttacttaaagaatattacgacccaatgtatcgctatcag
cttgagaaaaaagcggaaaaagttgtctttcgcggtgagtgggcggaagtggcggtatgg
gttaaggcgcagtga
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integrated database retrieval system
