Shigella flexneri 301 (serotype 2a): SF1088
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Entry
SF1088 CDS
T00097
Symbol
rne
Name
(RefSeq) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Pathway
sfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SF1088 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfl03019
]
SF1088 (rne)
03009 Ribosome biogenesis [BR:
sfl03009
]
SF1088 (rne)
Enzymes [BR:
sfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SF1088 (rne)
Messenger RNA biogenesis [BR:
sfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SF1088 (rne)
Ribosome biogenesis [BR:
sfl03009
]
Prokaryotic type
rRNA processing factors
SF1088 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-GeneID:
1024066
NCBI-ProteinID:
NP_707000
UniProt:
A0A0H2V013
A0AB36PET5
LinkDB
All DBs
Position
complement(1128893..1132075)
Genome browser
AA seq
1060 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD
LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH
YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP
AEPAATVVAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPE
RQQDRRKPRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT
EKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR
QLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEE
NNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVW
IRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVA
EPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPMVEPQEETADADIEEVA
ETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPE
APRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagatgggcagcgt
ctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaacatctacaaa
ggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattacggcgctgaa
cgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgctaactacagt
gctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtcattgttcag
atcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatcagtctggcg
ggtagctatctggttctgatgccaaataacccgcgcgcaggtggcatttctcgccgtatc
gaaggcgatgaccgtaccgaattaaaagaagcactggcaagccttgaactgccggaaggc
atggggcttatcgtgcgcaccgctggcgtaggcaaatctgctgaggcgctgcaatgggat
ttaagcttccgcctgaaacactgggaagccatcaaaaaagccgctgaaagccgcccggct
ccgttcctgattcatcaggagagcaacgtaatcgttcgcgccttccgcgattatttacgt
caggatatcggcgaaatccttatcgataacccgaaagtcctcgaactggcacgtcagcat
atcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtacaccggcgagatc
ccgctgttcagccactaccagatcgagtcgcagatcgagtccgccttccagcgtgaagtc
cgtctgccatccggtggttccattgttatcgacagcaccgaagcgttaacagccatcgac
atcaactccgcacgcgcgacccgcggcggcgatatcgaagaaactgcgtttaacaccaac
ctcgaagccgccgatgagattgctcgtcagctgcgcctgcgtgacctcggcggcctgatt
gttatcgacttcatcgacatgacgccagtacgccaccagcgtgcggtagaaaaccgtctg
cgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttctcgctttggc
ctgctggaaatgtcccgccagcgcctgagcccatcactgggtgaatccagccatcacgtc
tgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgctgtcgctctctatt
ctgcgtttgatcgaagaagaagcgctgaaagagaacacccaggaagttcacgccattgtt
cctgtgccaatcgcttcttatctgctgaatgaaaaacgttctgcggtgaatgcgattgaa
acgcgtcaggacggtgttcgctgcgtgattgtgccaaacgatcagatggaaaccccgcac
taccacgtgttgcgcgtgcgcaaaggggaagaaacgccgaccttaagctacatgctgccg
aagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaacgtaagcgt
cctgaacaacctgcactggcaacctttgccatgccggatgtaccgccagcgccaacccca
gctgaacctgccgcgactgtcgtagccccagcaccgaaagctgcaacggcaacaccagca
gctcctgcacaacctgggctgttaagccgcttcttcggcgcactgaaagcgctgttcagc
ggtggtgaagaagccaaaccgaccgagcaaccaacaccgaaagcagaagcgaaaccggaa
cgtcaacaggatcgtcgcaaacctcgtcagagcaaccgccgtgaccgtaatgagcgccgc
gacacccgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgtcgtaatcgt
cgccaggcacagcagcaaactgccgagacgcgtgagagccgtcagcaggctgaggtaacg
gaaaaagcacgtaccaccgacgagcagcaagcgccgcgtcgtgaacgtagccgccgccgt
aacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaagagcaatct
gttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgtaaacagcgt
cagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggtagtcgcaccg
gtggttgaagaaactgccgctgccgaaccaattgttcaggaagctccagctccacgcaca
gaactggtgaaagtcccgctgccagtcgtagcgcaaactgcaccagaacagcaagaagag
aacaatgctgataaccgtgacaacggtggcatgccgcgtcgttctcgccgctcgcctcgt
cacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttatccaacccag
tcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggcaaagtctgg
atccgctatccaattgtacgtccgcaagatgtacaagttgaagagcagcgcgaacaggaa
gaagtacaagtgcagccgatggtgactgaggtccctgtcgccgccgctgtcgaacctgtt
gttagcgcgccagttgttgaagaaatggctgaagtcgtagaagcccccgtaccggttgcc
gaaccgcaaccggaagtggttgaaacgacgcatcctgaagtgattgccgccgcggtaact
gaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtcgcagaacac
gcagaaccgatggttgaaccgcaggaagagacggcagatgcagatattgaagaagttgcc
gaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcgccagtc
gtcgctgaagtcgcagcagaagttgaaacggtggccgcggttgaaccagagatcaccgtt
gagcataaccacgctaccgcgccaatgacgcgcgctccggcaccggaatatgttccggag
gcaccgcgtcacagtgactggcagcgccctacttttgccttcgaaggtaaaggtgccgca
ggtggtcatacggcaacgcatcatgcctctgccgctcctgcgcgtccgcaacctgttgag
taa
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