Shigella flexneri 301 (serotype 2a): SF3205
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Entry
SF3205 CDS
T00097
Symbol
pnp
Name
(RefSeq) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Pathway
sfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SF3205 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfl03019
]
SF3205 (pnp)
03016 Transfer RNA biogenesis [BR:
sfl03016
]
SF3205 (pnp)
Enzymes [BR:
sfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SF3205 (pnp)
Messenger RNA biogenesis [BR:
sfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SF3205 (pnp)
Transfer RNA biogenesis [BR:
sfl03016
]
Prokaryotic type
tRNA degradation factors
SF3205 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_PDCD11
KH_2
OB_RRP5_4th
S1_RRP5
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-GeneID:
1025664
NCBI-ProteinID:
NP_708965
UniProt:
Q83JG0
LinkDB
All DBs
Position
complement(3301239..3303443)
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AA seq
734 aa
AA seq
DB search
MRRRSGINTSAVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQ
NINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSET
IATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ
PAAAPEAPAAEQGE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaagatcgggtattaacaccagtgccgtaaggtactgtctaagaaagagaaag
gatattacattgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgact
ctggaaaccggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgac
accgcggtatttgttaccgttgttggccagaaaaaagccaaaccaggtcaggacttcttc
ccactgaccgttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttc
ttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgc
ccgattcggccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtg
gtttctgttaacccgcaagttaacccggatatcgtcgcgatgattggtgcttccgcagca
ctgtctctgtctggtattccgttcaatggtccgattggtgctgctcgcgtaggttacatc
aatgaccagtacgtactgaacccgactcaggacgagttgaaagagagcaaactggatctg
gttgttgccggtactgaagccgctgtactgatggttgaatctgaagctgaactgctgagc
gaagaccagatgctgggcgcagtagtgttcggtcatgaacaacagcaggttgttattcag
aacatcaatgaactggtgaaagaagccggtaaaccacgttgggactggcagccggagccg
gtaaacgaagcgctgaacgcgcgcgttgctgcactggctgaagctcgcctgagcgatgct
taccgcatcaccgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaacc
atcgcgacgctgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctg
cacgcgatcgagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgac
ggtcgtgaaaaagatatgatccgtggtctggatgtgcgtactggcgtgctgccgcgtact
cacggttctgcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggt
actgctcgtgacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtgctggcagtcatgccggat
atggacaaattcccgtacaccgtacgtgttgtgtctgaaatcactgaatccaacggttcc
tcttctatggcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccgatc
aaagctgccgttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgta
ctgtctgacattttgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggt
tcccgcgagggtatctctgcattgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcgctgaaccaggctaaaggtgcgcgtctgcatatcctgggcgtaatg
gaacaggcgatcaacgcgccgcgtggcgatatctctgagttcgcaccacgtatccatacc
atcaagatcaacccggacaagatcaaagacgttatcggtaaaggcggctctgttatccgt
gccctgaccgaagaaactggcaccaccatcgaaatcgaagatgacggtactgtgaagatt
gcagcgaccgacggcgagaaagcgaaacatgctattcgtcgtatcgaagagatcactgca
gaaatcgaagtgggccgcgtctacactggtaaagtgacccgtatcgttgactttggcgca
tttgttgccatcggcggcggtaaagaaggtctggtacacatctctcaaatcgctgacaaa
cgcgttgagaaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagttctg
gaagttgatcgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaa
cctgctgcagcaccggaagctccggctgctgaacagggcgagtaa
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