Shigella flexneri 301 (serotype 2a): SF3290
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Entry
SF3290 CDS
T00097
Symbol
yhdA
Name
(RefSeq) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfl03019
]
SF3290 (yhdA)
Messenger RNA biogenesis [BR:
sfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SF3290 (yhdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-GeneID:
1027034
NCBI-ProteinID:
NP_709047
UniProt:
A0A384KWB2
A0AB36PHZ7
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Position
complement(3388963..3390903)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSA
LRPQITELMVSADIVRVDLLHGDKQVYTLARNGSYRPVGTSDLFRELSVPLIKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTGAIGFIILMLFLAVRWLQRQLAGQELLETRATRILNGER
GSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDN
QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIASQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTHV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagattaacgacgaaattttcggcctttgttacgctgctcaccgggttaacaattttt
gtgactttgctgggctgttcgctaagtttctacaacgccattcagtataagtttagtcat
cgcgttcaggcggtggcgacggcgattgatacccaccttgtgtcgaatgacttcagcgca
ttaaggccacaaattaccgaattaatggtgtcagcagatatcgttcgtgtagacctgctg
catggtgataaacaggtttataccctggccagaaatggtagttatcgtccggttggcacc
agcgatctgtttcgtgaactgagcgttccgttgataaagcatccggggatgtcgttgcgt
ctggtttatcaggatccgatgggcaactatttccattcgttgatgaccaccgcgccgctc
acgggggcgattggctttatcattcttatgctctttctggcggtacgctggttacaacgg
caacttgccgggcaagaattgctggaaacccgggctactcgtatcttaaacggtgagcgt
ggctctaatgtgttgggaaccatctatgaatggccgcccagaaccagcagtgcgctggat
acgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatc
cgctcttatgccgcacaggacgtgaaaaccggcctcaataaccgactctttttcgataat
cagttagcaacgttactggaagatcaggagaaagtaggtacccacgggatcgtgatgatg
attcgtctgccggatttcaatatgttgagcgatacctgggggcacagccaggttgaagaa
cagttcttcactctgacgaatctgctgtcgacatttatgatgcgctaccctggcgcactg
ctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag
gcagagagcatagccagtcagttaatcaaagccgtcgataccttgccgaacaataaaatg
ctcgatcgcgacgatatgatccacattggtatctgtgcctggcgtagtggtcaggatacc
gagcaggtaatggaacatgcagagtctgccacgcgtaatgcgggattgcagggtggcaat
agctgggctatttatgatgactcgttgcctgaaaaaggacgcggtaatgttcgctggcgt
acgcttatcgagcaaatgctcagtcgcggcggcccgcgcctttatcaaaaaccggcggtt
actcgcgaaggtcaggttcatcatcgcgaactcatgtgccgcatcttcgatggtaatgaa
gaggttagctcggcggagtatatgccgatggtcttgcagtttggcttatcggaagagtat
gaccgtctgcaaatcagccgtcttattccactattgcgttactggccagaggaaaatctg
gcgattcaggttaccgttgagtcgctgattcgtccgcgttttcagcgttggctgcgcgat
acgttaatgcaatgtgaaaaatcacaacgaaaacgcataattattgaacttgcagaggcc
gatgtaggtcaacatatcagtcgtttacaacctgttattcgtttagtgaatgctttaggg
gtacgggtagccgtcaaccaggctggtttgacgctggtaagcaccagttggatcaaagaa
cttaatgttgagttactcaagctccatccggggctggtcaggaacattgagaagcgaacg
gagaaccagctgctggttcaaagcctggtggaagcctgctccgggaccagcacccacgtt
tacgccaccggcgtgcgttcgcgaagcgagtggcagaccctgattcagcgcggtgttaca
ggcgggcaaggggattttttcgcgtcctcacagccacttgatactaacgtgaaaaaatat
tcacaaagatactcggtttaa
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