Shigella flexneri 301 (serotype 2a): SF3900
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Entry
SF3900 CDS
T00097
Symbol
recQ
Name
(RefSeq) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Pathway
sfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SF3900 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfl03019
]
SF3900 (recQ)
03400 DNA repair and recombination proteins [BR:
sfl03400
]
SF3900 (recQ)
Enzymes [BR:
sfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SF3900 (recQ)
Messenger RNA biogenesis [BR:
sfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SF3900 (recQ)
DNA repair and recombination proteins [BR:
sfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SF3900 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-GeneID:
1025456
NCBI-ProteinID:
NP_709628
UniProt:
Q83IW3
A0AB36PJJ6
LinkDB
All DBs
Position
4018999..4020834
Genome browser
AA seq
611 aa
AA seq
DB search
MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ
IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL
LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM
ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS
GIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM
GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG
QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI
ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH
LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK
LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL
IRAHVDGDDEE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaa
gaaacctttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctt
tccggtcgcgattgcctggttgttatgcccactggtggcggaaaatccctttgctatcaa
attcctgccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatg
aaagatcaggtggatcaactacaggccaacggcgtggcggcggcgtgccttaactcgacg
caaacccgcgaacagcaacttgaagtgatgacaggctgccgcaccgggcaaattcgctta
ctgtatatcgccccggaacgcctgatgctggataactttcttgagcatctggcgcactgg
aatccggtgttattagccgtcgatgaagcgcactgtatctcccaatggggtcacgatttc
cgcccggaatatgccgcgctcggtcagttgcgccagcggttcccgacgctgccgtttatg
gcgctgaccgccacagccgacgacaccacgcgccaggatatcgtgcgcctgctggggctg
aacgatccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatg
gagaaattcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtct
ggcattatctactgcaacagccgggcgaaagtagaagacaccgctgcgcgcctgcaaagc
aggggtattagcgcggcggcctatcatgccgggctggaaaataatgtccgcgccgacgtg
caggagaaattccagcgcgatgatctgcaaattgtggtggcgacggtggcgttcggcatg
ggcatcaataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaa
tcctattatcaggaaaccggtcgcgccgggcgtgatggcctgcctgcggaagcgatgctg
ttttacgatccggctgatatggcgtggctgcgccgttgtctggaagagaagccgcagggg
cagttgcaggatatcgagcgccacaaactcaatgcgatgggcgcgtttgccgaagcgcaa
acttgccgtcgtctggtattgctgaactattttggcgaagggcgtcaggagccgtgcggg
aactgcgatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagatt
gccctttccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtg
attcgtggtgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctat
ggtatgggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcat
ctcggcctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggccgcg
cgcccggtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctc
aaaccgaaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaa
ttacgcaaactgcgtaaatcgattgccgatgaaagtaatgtcccgccgtacgtggtgttt
aacgacgcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctc
agcgttaacggcgttgggatgcgcaagctggaacgctttggtaaaccgtttatggcgctg
attcgtgcgcatgtcgatggcgacgacgaagagtag
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