Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00541
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Entry
SPHFLASMR4Y_00541 CDS
T04949
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPHFLASMR4Y_00541 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfla03019
]
SPHFLASMR4Y_00541 (rne)
03009 Ribosome biogenesis [BR:
sfla03009
]
SPHFLASMR4Y_00541 (rne)
Enzymes [BR:
sfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SPHFLASMR4Y_00541 (rne)
Messenger RNA biogenesis [BR:
sfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPHFLASMR4Y_00541 (rne)
Ribosome biogenesis [BR:
sfla03009
]
Prokaryotic type
rRNA processing factors
SPHFLASMR4Y_00541 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASK87326
UniProt:
A0A220W3D5
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All DBs
Position
complement(560252..563026)
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AA seq
924 aa
AA seq
DB search
MTTRMLIDARHQEETRVAVVKGNKIEEFDFESSEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLAEEAEHAAEEAALRAQEEEEENAPADMVRS
EATEELDTALVEVDQDESVDTIDVTEGEIPVENGDDEDDDEDEDSEDDSSDDNDESHSEN
KGKSGGRRGRGGRQKGRGKGSMPKASDQARQKRMALRKRYKIQDVIQRRQVVLVQVVKEE
RGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKINNAGDRKRLKSIIADLKLPTSMGCI
VRTAGLSRTKPEIKRDFDYLARLWDEIREKTLSATAPSLIHSDSDLVKRAIRDIYNREIE
EVLVEGASGYTAAKNFMKLLMPSHSKRVKSYADPVSLFQRYGVEDQLSAMYSPEVQLKSG
GYLVINPTEALVSIDINSGRSTREHGIEATAVKTNMEAAAEIARQLRLRDMAGLVVIDFI
DMDRSGNVRKVERAMRDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTKVCPHCE
GTGLVRTASSAALSVLRLLEEEAAKGKASQITLRTSQEACIYVLNSKRHEIEDIEKRYGV
SIEIVPDGETEGARMDIQTSGSPPKNMPKFEPIIDDDDDDDRAEEADNGGNESRGDRSEG
EERPKRKRRRRGRRNRGGDRGEAGPSDNNGDNANGNANDVASDDKSETAAPAQDTDAGEQ
AEKPKPRSRRNSSRKADAAPVADSETAGEEKAEAKPRTRRRSAKSEAPAEQSAASAEPEA
DAIEEKPKRRRAPRKAKPAADAPAAEATDETADATAEKKAPVKRASRSRAKKADSAETAD
QTAAEAPKEAKTKEPKEAKETKAKAPAKPRKPRAAAKPKEDKAAKPKDETTAKPKEEAKA
SDSDAKESSDGGAPRQGWWQRTFG
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgactacgcgcatgctaatcgacgcgcgccaccaggaagaaacccgggtggcggtcgta
aaaggaaacaagattgaggaattcgattttgaatcttccgagcacaaacaacttaaaggc
aatatctatctagcaaaagtaacccgcgtcgaaccgtcgctgcaggccgcttttgtcgat
tatggcggcaaccgtcatggttttctcgccttttccgagatccatcccgactattaccag
attccaagagaagatcgcgaagcgctgctggccgaagaagccgagcatgccgctgaagag
gccgccctgcgcgcgcaggaagaggaagaagaaaacgcacccgccgacatggtgcgcagc
gaagccaccgaagagctcgacaccgctctggtcgaagtcgaccaggacgaaagcgtcgac
accattgacgtcaccgaaggtgaaattccggtagaaaatggtgatgacgaagacgacgac
gaggacgaggattcggaggatgattcgtccgacgacaatgatgaatcccatagcgagaac
aagggcaagagcggtggccgtcgcggacgtggtggtcgccagaagggccgcggcaagggc
agcatgcccaaggccagcgatcaggcccgccagaagcgtatggctctgcgcaagcgctac
aagatccaggatgttatccagcggcggcaggtcgtgctggtgcaggtcgtcaaggaagaa
cgcggcaacaagggcgcggcgctgacaacctatctcagcctcgccggccgctattgcgtt
ctgatgccgaacacctcccacggcggcggcatcagccgcaagatcaacaatgccggcgac
cgcaagcggctgaagtcgatcatcgccgacctgaagctgccaaccagcatgggctgcatc
gtgcgcaccgccggtctttcgcgcaccaagccggaaatcaagcgcgatttcgactatctc
gctcgcctgtgggacgaaatccgcgaaaagacgctgagcgcaacggcaccaagtctgatc
cacagcgacagcgacctggtcaagcgcgcgatccgcgacatttacaatcgcgagatcgag
gaagtgctggtcgagggtgccagcggctatacggctgcaaagaatttcatgaagctgctg
atgccgagccacagcaagcgggtgaagagctatgccgatccggtatcgctattccagcgc
tatggcgtcgaggaccagctatcggccatgtattcaccggaagtgcagctgaaatccggc
ggctatctggtcatcaacccgaccgaggcactggtgtcgatcgacatcaactccggacgc
tcgacccgcgaacacgggatcgaggcgaccgcggtcaagaccaatatggaagccgcagcc
gaaatcgcccgccagttgcgcctgcgtgacatggccggtctggtggtaatcgatttcatt
gacatggaccgcagcggcaatgtccgcaaagtcgagcgggcgatgcgcgacgcgctgaaa
aacgaccgcgcgcgcattcaggtcggacggatttccagcttcggcctgatggaaatgagc
cgccagcgcctgcgcaccggcgtgctcgaagcctcgaccaaggtttgcccccattgtgaa
ggcaccggactggtccggacggcatcatctgccgcactgtcggtactccgtctgctcgag
gaagaagcggccaagggcaaggccagccagatcaccctgcgcaccagccaggaagcatgc
atctatgtcctgaacagcaagcggcacgagatcgaggatatcgagaaacgctacggcgtc
tcgatcgaaatcgtccccgatggcgagaccgaaggggcgcggatggatatccagacttct
ggcagtccgccaaagaatatgccgaagttcgagcccattatcgacgatgacgatgacgat
gatcgcgcggaagaggctgacaatggcggcaacgaatccagaggcgaccgtagcgaaggc
gaagaacggccgaagcgcaaacggcgccggcgcggcagacgcaaccgcggtggcgatcgc
ggggaagccggcccgtcggacaataatggcgacaatgcaaacgggaatgcgaatgacgtc
gccagcgacgacaagagcgagacagcagccccggcgcaggacacggatgccggcgaacag
gccgaaaagcccaagccacgctcgcgccgcaacagcagccgcaaggctgacgctgcgccg
gttgcggacagtgagaccgctggcgaggaaaaggccgaagccaagccgcgtacaaggcgt
cgctctgcaaagagcgaagcaccggccgaacagtcggcggcaagcgccgagccggaagct
gatgccatcgaggagaaaccgaaacggcgccgcgcaccgcgcaaggccaagccggcggcc
gatgcacccgctgcagaagcgacggacgaaacggccgatgcaaccgccgagaaaaaggca
ccggtgaaacgcgcgtcacgatcacgggcgaaaaaggccgatagcgccgaaaccgctgat
cagaccgcagccgaagcgccaaaagaggccaaaaccaaagagccaaaagaggcaaaagag
accaaggcaaaagcgcctgccaagccacggaagccgagagcggcagccaagccgaaagag
gacaaggcggccaaacccaaggacgaaaccaccgccaaacccaaagaggaagccaaggca
tccgacagtgacgccaaggaatccagtgacggcggtgcaccgcgccagggctggtggcag
cgcaccttcgggtga
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