Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00586
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Entry
SPHFLASMR4Y_00586 CDS
T04949
Name
(GenBank) hypothetical protein
KO
K02600
transcription termination/antitermination protein NusA
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfla03021
]
SPHFLASMR4Y_00586
03009 Ribosome biogenesis [BR:
sfla03009
]
SPHFLASMR4Y_00586
Transcription machinery [BR:
sfla03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SPHFLASMR4Y_00586
Ribosome biogenesis [BR:
sfla03009
]
Prokaryotic type
rRNA transcription factors
SPHFLASMR4Y_00586
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
S1
KH_2
KH_1
KH_NusA_C
HHH_5
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ASK87371
UniProt:
A0A220W3F6
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All DBs
Position
612186..613811
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AA seq
541 aa
AA seq
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MGSAISANKAELLAIATAVATEKMIDKAIVIEALEEAIQKAARARYGAENDIRAKFDINT
GDLRLWRVVEVVEEVEDYFKQVDIKQAEKLEPGAKVGDFIVDPLPEVDLGRIDAQSAKQV
IFQKVRDAERERQFAEFKDRAGEIITGVVKSVEFGHVVVDLGRAEGVIRRDQQIPREAAR
VGDRVRSLILDVRRENRGPQIFLSRAHPDFMKHLFAQEVPEIYDGIIEIKAAARDPGSRA
KIGVISHDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDIATFVVNALQPATVS
RVVIDEEEGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGLAIDIMTEADSSEKRQAEFAA
RTEMFQEDLDVDETLSQLLVAEGFSELEEVAYVAPEEISNIEGFDDELAAELQSRALEAL
ERREAAAREKRTELGVEDAIAELPHLTEAMLVTLGEAGLKTLDDVADLATDELVLKRKSE
PRRRNDNRKPEPDGVLAKYGLTEEQGNEIIMAARAHWFEDEDEPAAAEVETGEDADAESP
Q
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgctatttcagccaataaagccgagttgcttgcgattgcgaccgccgttgcg
acggaaaaaatgatcgacaaggcgattgtgatcgaagcgctggaagaagccatccagaag
gcggcgcgtgcccgctatggcgcagagaatgacattcgtgcaaaattcgatatcaatacc
ggcgacctgcgtctctggcgggttgtcgaagtcgtcgaggaagtcgaggattatttcaag
caggtcgatatcaagcaggccgaaaagctggagccgggcgccaaagtgggtgactttatc
gtcgatccgctgccggaagtcgatctcggccgcatcgatgcgcagtcggccaagcaggtt
atctttcagaaagtccgcgacgcagaacgcgagcggcaatttgcagaattcaaggaccgg
gccggtgaaatcattaccggtgtggtgaaatcggtcgaatttggccatgtggttgtcgat
ctgggccgcgccgaaggcgtgatccgtcgtgaccagcagattccgcgggaagcagctcgt
gttggcgatcgtgtccggtcgctgatcctggatgtgcgtcgcgaaaatcgcgggccgcag
attttcctgtcccgtgcccacccggatttcatgaagcatctttttgcccaggaagtgccg
gaaatttacgacggcatcatcgaaatcaaggccgctgcccgcgatcctggctcgcgcgcc
aagatcggtgtgatcagccacgacagttccattgatccggtcggcgcctgtgtcggtatg
aagggtagtcgcgttcaggctgtcgttcaggaaatgcagggcgagaaaatcgacatcatt
ccctggtcggaagatatcgcgaccttcgtggtcaacgcattgcaaccggccaccgtcagc
cgcgtggttatcgacgaagaagaaggtcgcatcgaagttgtcgtgcctgacgatcagctg
agccttgccattggtcgccgcggccagaatgtgcgtctggcatcgcaactgaccggcctt
gccattgatatcatgaccgaggcggattcgagcgagaaacggcaagcggaatttgccgcg
cggacggaaatgttccaggaagatctggacgtcgatgaaaccctgtcgcagttgctcgtc
gccgaagggttcagcgagcttgaagaagtcgcctatgttgcaccggaagaaatttcgaac
atcgaaggatttgacgacgagcttgcggccgaattgcagagccgtgcgcttgaagcgctg
gaacggcgcgaagcggctgcgcgcgaaaaacgtaccgaactgggtgtcgaggacgcgatt
gccgaactgccgcacctgaccgaagcgatgttggtcactctcggcgaagcgggcctcaag
acgctggacgatgttgcggatctcgcgaccgacgagcttgttctcaagcggaaatcggag
ccgcgtcgccgcaatgacaatcgcaagcccgagcccgatggtgtgctggccaaatatggt
ctgaccgaagagcagggcaacgaaatcatcatggccgcgcgtgcgcactggtttgaggat
gaagacgagccggctgctgccgaagtggaaaccggggaggacgcagatgcggaatctccc
caatga
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