Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00595
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Entry
SPHFLASMR4Y_00595 CDS
T04949
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPHFLASMR4Y_00595 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfla03019
]
SPHFLASMR4Y_00595 (pnp)
03016 Transfer RNA biogenesis [BR:
sfla03016
]
SPHFLASMR4Y_00595 (pnp)
Enzymes [BR:
sfla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SPHFLASMR4Y_00595 (pnp)
Messenger RNA biogenesis [BR:
sfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPHFLASMR4Y_00595 (pnp)
Transfer RNA biogenesis [BR:
sfla03016
]
Prokaryotic type
tRNA degradation factors
SPHFLASMR4Y_00595 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
CSD
DUF3016
Motif
Other DBs
NCBI-ProteinID:
ASK87380
UniProt:
A0A220W3G8
LinkDB
All DBs
Position
620965..623229
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AA seq
754 aa
AA seq
DB search
MFDVKKVEMEWGGQTLTLETGRIARQADGAVLATLGETVVLCAVTAAKSVREGQDFFPLT
VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPCRPLFPEGFYNEINVICQVMSY
DGVNEPDILAMVAASAALTISGVPFMGPIGAARVGYKEGEYQLNPSMEEVAEGELDLVVA
ATHGAVMMVESEAQELSEEVMLGAVQFAHEASKQVAGLIIDLAEQAAKEPWKLDAGDDNS
EIKEELHKLVGDDIAAAYKKTDKSERSDALNAVREKAKEKYAEADGQTQMTAGKMVKKLE
AEIVRGAIIKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAIVTTTLGTKDA
EQMIDGLDGLSYTNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPVLPTVEEF
PYTIRVLSDITESNGSSSMATVCGGSLAMMDAGVPLARPVSGIAMGLILEGEDFAVLSDI
LGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITQEIMKSALEQASGGRAHILGEMSKAL
SSVRTEMSEHAPRIETLQINKEKIRDVIGTGGKVIREIVAETGAKVDIDDEGLIKVSSSD
KSQIDAAIAWIKGIVEEAEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEK
VSDELSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPPRENKPRGPRRDGGGG
RGRGRDGGGRGRNNDGPKNEGGGDIPLPSSITED
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgtaaagaaagttgaaatggagtggggcggacagaccctcaccctcgaaacg
ggccgtattgcccgtcaggctgatggcgcggttctcgcgaccctcggcgaaacggttgtg
ctgtgcgcagttaccgccgccaaatcggtgcgcgaaggacaggacttcttcccgctgacc
gtccactatcaggaaaaattctcagccgccggccgtattccgggcggtttcttcaagcgc
gaaggccgtgcgacggaaaaggaaacgctgacatcgcgtttgatcgaccgtccttgccgt
ccgctgtttcccgaaggcttctacaacgaaatcaacgtaatctgtcaggtgatgagctat
gacggcgtcaacgaaccggacattctggcgatggttgcggcgtctgctgcactgaccatt
tccggcgttccgttcatggggccgatcggtgccgcacgcgtcggttacaaggaaggcgaa
tatcagctgaacccgtcgatggaagaagttgccgaaggcgaactcgacctggtggttgca
gcaacgcatggcgcggtgatgatggtggaatcggaagcacaggagctgtccgaagaagtc
atgctcggtgctgtccagttcgctcacgaagcgtccaagcaggttgctggcctgatcatc
gatctggcggagcaggctgcgaaagagccctggaagctcgacgccggtgatgacaatagc
gaaatcaaggaagagctgcacaagctggtcggagacgatatcgctgcggcttacaagaaa
accgacaagtcagagcgtagcgacgcgctgaacgcggttcgcgaaaaagccaaggaaaaa
tatgccgaggctgacggccagacgcagatgaccgccggcaagatggtcaagaagctggaa
gccgaaatcgttcgtggtgccatcatcaaggacggcacccgtatcgatggccgcaagctt
gatcaggttcgtccgatcgaagccatggttggcctgttgccacggacccacggttcggct
ctgttcacgcgcggtgaaacgcaggcgattgtgaccacgaccctgggcaccaaggacgcg
gagcagatgatcgacggtctcgacggtctgagctacaccaacttcatgctgcactataac
ttcccgccttattcggttggtgaagtgggccgtttcggctttaccagccgccgcgaaacc
ggccacggcaagctcgcattccgtgcgctccgtccggttctgccgacagtggaagaattt
ccgtacacgatccgtgttctctcggacattaccgagtccaacggttcctcttcgatggcg
accgtttgtggcggttcgctggcaatgatggatgctggtgtgcctctggcgcgtccggtt
tccggtattgccatgggcctgatcctcgaaggcgaagatttcgccgttctttccgacatt
ctcggcgacgaagatcatctcggtgacatggacttcaaggttgcgggtaccgaaaagggc
atcacctccctgcagatggacatcaaggtagccggcattacgcaggaaatcatgaagtct
gctctggaacaggccagtggcggtcgcgcgcatatcctcggtgaaatgagcaaggcgctg
tcttcggttcggaccgaaatgtccgaacatgctccgcgcatcgaaacgctgcagatcaac
aaggagaagatccgcgacgttatcggtaccggcggcaaggtcattcgcgaaatcgttgct
gaaaccggcgcgaaggtcgacattgatgacgaaggcctgatcaaggtttcctcttccgac
aaatcccagattgacgcggccatcgcatggatcaagggtattgtcgaagaagctgaagtc
ggaaaagtctatgacggcaaggttgtgaacctggtcgactttggcgcattcgtgaatttc
atgggtggcaaggacggtctcgtccatgtttccgaaatcaagaacgagcgggtcgagaag
gtctccgacgaactgagcgaaggccaggaagtcaaggtcaaggttctcgaaatcgaccag
cgcggcaaggttcgcctgtcgatgcgggttgtcgaccaggaaaccggtgaagaactggaa
gacacgcgtcctccacgcgaaaacaagccacgcggcccgcgtcgtgatggcggtggcggt
cgtggacgcggccgtgacggcggcggacgtggccggaacaatgatggtccgaagaacgaa
ggcggcggcgatattccattgccgtcctcgatcaccgaagactag
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