Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00826
Help
Entry
SPHFLASMR4Y_00826 CDS
T04949
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfla03032
]
SPHFLASMR4Y_00826 (topA)
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_00826 (topA)
Enzymes [BR:
sfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SPHFLASMR4Y_00826 (topA)
DNA replication proteins [BR:
sfla03032
]
Prokaryotic type
DNA Topoisomerases
SPHFLASMR4Y_00826 (topA)
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SPHFLASMR4Y_00826 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Poly_export
DUF7343
Motif
Other DBs
NCBI-ProteinID:
ASK87606
UniProt:
A0A220W454
LinkDB
All DBs
Position
complement(867182..869779)
Genome browser
AA seq
865 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGSDFKVLASYGHIRDLPPKDGSVDPDDGFAMTWQNYTDKTK
QLKAITDESKKATRLILATDPDREGEAISWHVQEVLRKKKALPEKVDRVTFNAITKAAVT
EAMAHPRELDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVSLKLIVERE
REIEAFKPQEYWSVTAQMEQGGQAFEARLTVHQGNKLGKMDLANDEQATIAKNAVENGLF
TVETIETKPLTRNPPPPFTTSTLQQEAARKLGYSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIADRYDASYVPDSPRIYKSKAKNAQEAHEAIRPTSFTKRTVGSGDHAK
LYDLILKRAMASQMASARLERTTVEMLDGSGQTGLRANGQVVKFPGFLALYEEGRDDDKG
EDGGLLPAMSKGDSPAKKAVDASQHFTQPPPRYSEASLVKKMEELGIGRPSTYASIIKTL
KDRAYVRVEKNRFFAEESGRLLTGFLERFFDRYVAYDYTAGLEDELDEVSGGRAQWQAIL
EAFWHDFKPKTVEVMEKMPSEVTAELDKFLGDYLFPEKEDGSDPRLCPRCNEGKLALRGG
RFGAFVACSNYPECKFTRRFAQGGGANADEDEGPQELGVDPDSDEKITKKVGRFGPYVEK
GEGKEAKRSSIPKDIPPEDFGLEWAVKLLSLPREVGKHPETGEPVTAQIGRYGPYLSHNG
KSARLENTQEVFEIGMNAAVAKLADAAKNGGGRGRGKMEPLKIMGNHPRTEVEIKLMDGR
YGPYVTDGTTNASLPKTVDKDQLTLEEAAQLIDDRAAKGPAKKRAKKKAAPKKKPAAKKK
PAAKKKPAARKKPAANKAPAKEKSE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgcagctagtcattgtcgagtcacccgccaaagcgaaaaccatcgagaaatatctggga
tcggatttcaaggtattggcttcctacggccatattcgcgaccttccgcccaaggatggt
tctgtcgatcctgacgatggcttcgcgatgacatggcaaaattacaccgacaagaccaag
cagctcaaggcgattaccgacgaatcgaaaaaggcaacgcgattgatcctcgcaactgac
cctgaccgggaaggcgaagcgatcagctggcatgttcaggaagtgttgcggaagaaaaag
gcacttccggaaaaggtcgaccgggtcacgttcaacgccattaccaaggctgcagtgacc
gaagccatggcccatcctcgcgagttggacgaggacctgatcgatgcctatcgggcgcgg
cgggcactcgattatctcgtgggatttaccctgtctcccgtactctggcgcaagctcccg
ggggcaaagtcagcagggcgcgtacagtcggtgtcgctcaagctgatcgtggagcgggaa
cgtgaaatcgaggcattcaagccgcaagaatattggtcggttacagcccaaatggaacag
ggcggtcaggcgttcgaggcgcggctgaccgtgcatcagggcaacaagctcggcaagatg
gaccttgccaatgacgagcaggccacgattgccaaaaatgccgttgaaaacggtcttttc
acggttgaaaccatcgagacgaagccgcttacccgcaatccgccaccacccttcacgacc
tccaccctgcagcaggaagccgcgcgtaaactcggctattccgccagccatacaatgcgt
atcgcgcaacaactctacgaagatggtgcgatcacctatatgcgtaccgatggtgtccag
atggatgggagcgccatctctgctgcccgcaaggccatcgctgatcgatacgatgcgagc
tatgttccggacagcccgcgcatatacaaatcgaaagccaaaaatgcacaggaagcccat
gaagctatccgtccgaccagcttcaccaagcggactgtcggaagtggcgatcatgccaag
ctttacgatttgatcctgaagcgggcgatggcaagccagatggcttcggcccggcttgag
cgcacgaccgtcgaaatgctcgatggcagcgggcaaacgggcctacgggcaaatgggcag
gtcgtgaagttccccggatttctggcgctttatgaggaaggccgggatgacgacaagggt
gaggacggtggtctgttgccagccatgtccaaaggcgacagcccggcgaaaaaagcggtg
gatgcatcgcagcatttcactcagccaccaccgcgctatagtgaggccagtctggtcaag
aagatggaagaactgggtatcggccggccgtcaacctacgcctcgattatcaagacgctg
aaggatcgcgcttacgtgcgcgtcgagaaaaaccgcttctttgcggaagaaagcggccgg
cttctgaccggatttctcgaacgctttttcgatcgctatgtggcctatgattataccgcc
ggacttgaagatgagctagatgaagtcagcgggggcagagcccaatggcaggcgattctc
gaagctttctggcacgatttcaaacccaagactgtcgaagtcatggaaaagatgccgtca
gaggtgactgccgaactggacaagttcctcggcgattatctgttccccgaaaaggaagat
ggatcggatccccggctttgcccgcgttgcaacgaaggcaagctggcgctgcgcggcggc
cgtttcggtgcttttgtggcctgttccaactatccggagtgcaagttcacccggcgcttc
gcgcagggcggaggtgccaacgccgacgaggatgaaggccctcaggaactgggcgttgat
ccagacagcgacgagaaaatcaccaagaaggttggccgttttggtccctatgtggaaaaa
ggcgagggcaaggaagcgaagcgctcgtcgatcccgaaggatattccaccggaagatttt
ggtcttgaatgggccgtgaagctgctgtcgctgccccgtgaagttggcaagcacccggaa
actggcgaacccgtaacagcgcagatcggtcgctatggtccttacctgagccacaatggc
aagtctgccaggctcgagaacacgcaggaggtttttgaaatcggcatgaacgctgccgtg
gccaagctggcagatgccgccaaaaatggtggcggtcgcggacgcggcaagatggagccg
ctcaaaatcatgggcaaccatccgcgcaccgaggttgaaatcaagctgatggacggccgc
tatggtccttatgttaccgacgggacaaccaatgcttcactgccgaagacggtcgacaag
gatcagctcacgttggaagaagcggctcagttgattgacgaccgcgcagccaaaggaccg
gccaagaaacgggccaagaaaaaagcggctccaaagaagaaaccggccgccaagaaaaag
ccggcagcgaagaagaagccagctgcaaggaagaaacctgcagccaataaggcgccggcc
aaggaaaaatcagaatag
DBGET
integrated database retrieval system
