Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00837
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Entry
SPHFLASMR4Y_00837 CDS
T04949
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfla03009
]
SPHFLASMR4Y_00837 (rlmD)
Enzymes [BR:
sfla01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SPHFLASMR4Y_00837 (rlmD)
Ribosome biogenesis [BR:
sfla03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SPHFLASMR4Y_00837 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Met_10
MTS
Motif
Other DBs
NCBI-ProteinID:
ASK87617
UniProt:
A0A220W473
LinkDB
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Position
complement(880016..881224)
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AA seq
402 aa
AA seq
DB search
MIATADPDLIIRVAAKGDGVTADGRHIAFSAPLDRLNDEGGLIKGPHHVEPPCQHFQSCG
GCSLQHLDAESYTRFLTERVAYALEGQGLVAGTMHPPQISQPRSRIRASLRAAKLGDQFK
LGFSGAGSHRIVDLKQCEIMAPELFALLAPLRSFLKKVSRRKHDMNIEMTLIDQGVDLLI
SNYEPEGLEQREALSAFAQDNGVARLSVDGGYGPETQWEPEPATVTLNGTVVGFPHSSFL
QPTREGQQALVAAMRDAVGEARLVADLFAGLGTFTLALGPDQKVYAAEGARDAIGSLKMA
ANHSPRQIFCEHRDLFRRPLSVEELNRFDAVILDPPRAGARDQILQLAQSDVAKICYISC
NPASFARDAKQLCEAGYKLDQVWPVGQFLWSTHVELVSSFSR
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgaccgccgatcccgacctgatcattcgcgttgccgcgaagggcgatggtgtg
accgctgacggtcgccacattgctttttctgcgccgctcgatcggctgaatgatgagggt
ggcctgatcaaggggccacatcatgttgaaccgccctgtcagcatttccagtcctgcggc
ggttgcagcctgcaacatctcgatgccgagagctacacccgctttctcaccgagcgcgtg
gcctatgcactggaaggccaggggctggtcgccggaaccatgcacccgccccagatttcc
cagcccagaagccgaatccgtgccagcctgcgggcggcgaagctgggcgaccagttcaag
ctcgggttcagcggagccggcagccacaggattgtcgatctcaagcaatgcgagatcatg
gcgcccgaactattcgctttgctcgcgccgctgcggagctttctcaaaaaggtctctcgc
cgcaaacatgacatgaatatcgagatgaccctgatcgatcagggtgtcgatctgctgatc
agcaattacgaaccggaaggtctggagcagcgcgaagcgctgtccgcctttgcccaggac
aacggtgtcgcgcgcctgtcggtcgacggcggctatggtcccgaaacccagtgggaaccg
gaaccggcaacagtcacgttgaatggcactgtcgtcggttttccgcacagcagcttcctg
cagccaacgcgggaaggccagcaggctctggttgctgccatgcgggacgcggttggtgaa
gcgcgtctggtggcggacctgttcgccgggcttggcacatttaccctggctcttggcccg
gaccagaaagtctacgcggccgaaggcgcgcgcgatgctatcgggtcgctgaaaatggcc
gccaaccattcgccccggcagatattctgcgagcaccgtgaccttttccggcggccgcta
agcgttgaagagctgaaccgctttgacgccgtcattctcgatccgccgcgcgccggtgcg
cgcgaccagatcttgcagttggcgcagtccgacgtcgcgaaaatatgttatatcagctgc
aacccggccagtttcgcccgcgatgccaagcagctttgcgaagcgggttacaaactcgac
caggtctggcctgtcggccagtttctctggtcgacccatgtcgagcttgtttccagcttc
agccgctag
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