Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00953
Help
Entry
SPHFLASMR4Y_00953 CDS
T04949
Symbol
hupB
Name
(GenBank) DNA-binding protein HRm
KO
K03530
DNA-binding protein HU-beta
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfla03032
]
SPHFLASMR4Y_00953 (hupB)
03036 Chromosome and associated proteins [BR:
sfla03036
]
SPHFLASMR4Y_00953 (hupB)
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_00953 (hupB)
DNA replication proteins [BR:
sfla03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SPHFLASMR4Y_00953 (hupB)
Chromosome and associated proteins [BR:
sfla03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SPHFLASMR4Y_00953 (hupB)
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SPHFLASMR4Y_00953 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF2267
HU-CCDC81_euk_1
Nup214_FG
Motif
Other DBs
NCBI-ProteinID:
ASK87728
UniProt:
A0A220W4H3
LinkDB
All DBs
Position
complement(993715..993990)
Genome browser
AA seq
91 aa
AA seq
DB search
MNKQDLISNVADQSGLSKSDAGKAVDAVFDSISSALSGGGEVRLVGFGTFSTSKRKASTG
RNPRTGEPMQIPASTQAKFKAGKGLKDAVNK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacaggaccttatcagtaacgtcgccgatcagagcggcctcagcaaaagcgat
gccggcaaagcggtagacgctgtatttgattccatcagcagtgcattgtccggcggtggc
gaagttcgtctcgttggcttcggcacattctcaacctcaaagcgcaaagcttccaccggc
cgcaatccgcgcaccggcgagccaatgcagattccagcatcgacacaagccaaattcaaa
gccggcaagggcttgaaagacgccgtcaacaaataa
DBGET
integrated database retrieval system
